Non-Coding RNA Search

Ss1.1-LyN1-MLN01G090048.5

Sequence:


               
               GAAGCCACCTCCCTCAGTGCTTTCCGGGCCCGAGCTGGACTGGGGCCTTCCGTGCTTGCT
TAACCCCCGGGCTCGAGCCGAGTACAGGACCCTGCCCCGGGCGCTCGAGGGGCGCCTCCC
CTCAGACGGTGCCTGTGTCCGCGTCTGCCAGACACCTGAGCCCAGGGGTCTTGGTCCTCG
TCACTGCCAGTCTTCCTCCCCCCTCCCGGAGTCTCCAGGGCCACACGGGCACGCGTCTGT
GATGGGGTCTGCAAGAGACACCCACACGCGTGGGCTGGTACGTGGGCCAGTGTGGACCGG
GCCCGCCTGCCGCCTTGGAGGAAGCCCTGCCCTCTCTGGGCCTGTTTTCTCCGTTGAAGA
ATGAACTGGTTGGACTTGCTGACGTCTGGGGCCCTGCCAGCACGAACATTCGAGAACATT
CCAGGGCTTGTACACTTGCCCAGGTGAAGCAAGACCAAACACCCCAAACCTGTCTCCCAG
GGGTCAGCCGGGGTCTGGGGAGACTCCAGACCCCACATCACACTCCGAGCATTCAGGAAC
TGTGACCCTTCTCCAGGCCCCTGGCAAGTCCCAAAAGGCCAGCTGCTCGGGCCTTGACTC
TGTGACAGCCGGCGTCCTGGAACGCCTCCGGCAGCTGCCCCAGGAACACGGGGAGACCAC
GGGGGCCCTCGCAGCGCCCACATGGCCTCTGGAGCTCTGCCGGGCAAGGAGGCAGAGTCA
GCAAATCAGACCGTCGGGCACTGCCCACCAGCCCAGCACCTGCCGTCCAGGTCTGTGCCC
TGGACCTAAAGGACCGAGAAAGGGCAAGAAGCCTTGGATGGGGGACCTGAGAAAGGGGCG
CGAGAGGTGGGGTTGCCTTCCCACCCGCCAGCTGCCCCATCCTGAGGCCGGAAGCATGGG
AGGGGCTTTGTCTGCCCAGGGGGAGTGGGCGCTGTGGCCAAGGCCGGGGGCTGGGGAGGG
CCGGATGCGGGTGAGGGGAGGCCAGCGCCTCTGGACACCAGCCCCCTGTGCTGGTTGGCA
GCCCTGAAGCCTGGTCCGGGAGAGGGTGTGGGCTCTCACTACGGTACCAAAGACGTAATC
ACCTAGGTTTACAAGTATTCTTAGGACTCACATAACTCACATTTATACAACAGAAGTGCT
ATTTTGTACGCCATCAAATTTGCCTCTCTGTGTACTTTTTTTTAAGAGAAAGATTTTAAT
ATTAAACTGGTGCTTCTCACTCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCCACCTCCCTCAGTGCTTTCCGGGCCCGAGCTGGACTGGGGCCTTCCGTGCTTGCT
TAACCCCCGGGCTCGAGCCGAGTACAGGACCCTGCCCCGGGCGCTCGAGGGGCGCCTCCC
CTCAGACGGTGCCTGTGTCCGCGTCTGCCAGACACCTGAGCCCAGGGGTCTTGGTCCTCG
TCACTGCCAGTCTTCCTCCCCCCTCCCGGAGTCTCCAGGGCCACACGGGCACGCGTCTGT
GATGGGGTCTGCAAGAGACACCCACACGCGTGGGCTGGTACGTGGGCCAGTGTGGACCGG
GCCCGCCTGCCGCCTTGGAGGAAGCCCTGCCCTCTCTGGGCCTGTTTTCTCCGTTGAAGA
ATGAACTGGTTGGACTTGCTGACGTCTGGGGCCCTGCCAGCACGAACATTCGAGAACATT
CCAGGGCTTGTACACTTGCCCAGGTGAAGCAAGACCAAACACCCCAAACCTGTCTCCCAG
GGGTCAGCCGGGGTCTGGGGAGACTCCAGACCCCACATCACACTCCGAGCATTCAGGAAC
TGTGACCCTTCTCCAGGCCCCTGGCAAGTCCCAAAAGGCCAGCTGCTCGGGCCTTGACTC
TGTGACAGCCGGCGTCCTGGAACGCCTCCGGCAGCTGCCCCAGGAACACGGGGAGACCAC
GGGGGCCCTCGCAGCGCCCACATGGCCTCTGGAGCTCTGCCGGGCAAGGAGGCAGAGTCA
GCAAATCAGACCGTCGGGCACTGCCCACCAGCCCAGCACCTGCCGTCCAGGTCTGTGCCC
TGGACCTAAAGGACCGAGAAAGGGCAAGAAGCCTTGGATGGGGGACCTGAGAAAGGGGCG
CGAGAGGTGGGGTTGCCTTCCCACCCGCCAGCTGCCCCATCCTGAGGCCGGAAGCATGGG
AGGGGCTTTGTCTGCCCAGGGGGAGTGGGCGCTGTGGCCAAGGCCGGGGGCTGGGGAGGG
CCGGATGCGGGTGAGGGGAGGCCAGCGCCTCTGGACACCAGCCCCCTGTGCTGGTTGGCA
GCCCTGAAGCCTGGTCCGGGAGAGGGTGTGGGCTCTCACTACGGTACCAAAGACGTAATC
ACCTAGGTTTACAAGTATTCTTAGGACTCACATAACTCACATTTATACAACAGAAGTGCT
ATTTTGTACGCCATCAAATTTGCCTCTCTGTGTACTTTTTTTTAAGAGAAAGATTTTAAT
ATTAAACTGGTGCTTCTCACTCAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               18-110, - strand, RNAz p=0.892791
               

               
               448-564, - strand, RNAz p=0.84785
               

               
               817-922, - strand, RNAz p=0.892555

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               18-110, - strand, RNAz p=0.892791
               

               
               448-564, - strand, RNAz p=0.84785
               

               
               817-922, - strand, RNAz p=0.892555

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               18-922, gnl|bosTau2|chr7 (38713315-38712389)
               

               
               18-922, gnl|Hg17|chr5 (149474947-149473972)
               

               
               18-922, gnl|Mm7|chr18 (61473310-61474185)
               


               
               948-1223, gnl|bosTau2|chr7 (38712294-38712005)
               

               
               948-1223, gnl|Hg17|chr5 (149473875-149473597)
               

               
               948-1223, gnl|Mm7|chr18 (61474229-61474499)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-922, gnl|bosTau2|chr7 (38713315-38712389)
               

               
               18-922, gnl|Hg17|chr5 (149474947-149473972)
               

               
               18-922, gnl|Mm7|chr18 (61473310-61474185)
               


               
               948-1223, gnl|bosTau2|chr7 (38712294-38712005)
               

               
               948-1223, gnl|Hg17|chr5 (149473875-149473597)
               

               
               948-1223, gnl|Mm7|chr18 (61474229-61474499)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               nmm (0.398406)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.398406)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	18-110, - strand, RNAz p=0.892791
	448-564, - strand, RNAz p=0.84785
	817-922, - strand, RNAz p=0.892555

	18-922, gnl\|bosTau2\|chr7 (38713315-38712389)
	18-922, gnl\|Hg17\|chr5 (149474947-149473972)
	18-922, gnl\|Mm7\|chr18 (61473310-61474185)

	948-1223, gnl\|bosTau2\|chr7 (38712294-38712005)
	948-1223, gnl\|Hg17\|chr5 (149473875-149473597)
	948-1223, gnl\|Mm7\|chr18 (61474229-61474499)

	nmm (0.398406)
	nlu (0.191681)
	nep (0.183925)
	csp (0.161186)
	lnt (0.142308)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	clu (0.119646)
	jca (0.11396)
	cty (0.10408)