Ss1.1-LyN1-MLN01G090070.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGTTTTCCCCCCAGGAGCCTCCGAGGTCACGGGCTTGGGGAAGGGGACGCGGAGGGGCG AGCATGGCGGGGCCCGCGCTGTCTCCCGGGCTCAGCAACTGGTTGGTGCTGCTGCTGCTG CTCCTCTCAGGTGAGACGGTGCTGGAGGCCGAAACAAAGGAACTCCGGGATCCCAAAGGA GGCGCTTGCTCCCGGATCTGGCAGCACCCACGTTTCGTGGCCAGGAAACGGGGCTCCATG GTGGAAATCAGGTGCTACGTGGAGGACCCTGGCATCGTAAGCTGGCTCCGGAAGCAGGAG GCGGACTTGGAGCCCAAGATATTTCCGCCCGAAGAGGGCCGCATCATCCAGAATCAGACC ACCTCCGAGGCCACTCTCATCATCCAGGGTGTCCAGTTTCAGGACAACGGTGTCTATTAC TGCAAGCAGGAGTGCTCCAAGGAGCCCCTGAGGACAGAGCAGGGCTGTGGCACTGAGCTT CGGGTCATGGGGTTCAGCACCCTGGCACAGCTGAAGCGGCGGAACACGCTGAAGGATGGC ATCATCATGATCCAGACCCTGCTCATCATCCTCTTCATCATCGTGCCCATCTTCCTGCTC CTGGACAAGGACGACAGCAAGCCTGGGATGGAAGAGGATCACACCTACGAGGGCCTGGAC ATTGACCAGACAGCCACTTACGAGGACATAGTGACACTGCGGACAGGGGAGGTGAAGTGG TCGGTGGGTGAGCACCCTGGCCAGGAGTGAGGGGCCGGCCATCCCTGCGCCCCCGGGCCC AGCCTGCTGGACCCTCATTGACTGCTTCAGAGCCGCCTGGCTCCCAGCCCACCCCCCTTT CTCTGGAGCCCCTGTCAGCCTCCAAAGCTGGCCAGCCAGATCCGCCTGTCCCTCCCGCCC TTGGTCCCCAACTCTCACCGGAGGGACTGGAGTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGTTTTCCCCCCAGGAGCCTCCGAGGTCACGGGCTTGGGGAAGGGGACGCGGAGGGGCG AGCATGGCGGGGCCCGCGCTGTCTCCCGGGCTCAGCAACTGGTTGGTGCTGCTGCTGCTG CTCCTCTCAGGTGAGACGGTGCTGGAGGCCGAAACAAAGGAACTCCGGGATCCCAAAGGA GGCGCTTGCTCCCGGATCTGGCAGCACCCACGTTTCGTGGCCAGGAAACGGGGCTCCATG GTGGAAATCAGGTGCTACGTGGAGGACCCTGGCATCGTAAGCTGGCTCCGGAAGCAGGAG GCGGACTTGGAGCCCAAGATATTTCCGCCCGAAGAGGGCCGCATCATCCAGAATCAGACC ACCTCCGAGGCCACTCTCATCATCCAGGGTGTCCAGTTTCAGGACAACGGTGTCTATTAC TGCAAGCAGGAGTGCTCCAAGGAGCCCCTGAGGACAGAGCAGGGCTGTGGCACTGAGCTT CGGGTCATGGGGTTCAGCACCCTGGCACAGCTGAAGCGGCGGAACACGCTGAAGGATGGC ATCATCATGATCCAGACCCTGCTCATCATCCTCTTCATCATCGTGCCCATCTTCCTGCTC CTGGACAAGGACGACAGCAAGCCTGGGATGGAAGAGGATCACACCTACGAGGGCCTGGAC ATTGACCAGACAGCCACTTACGAGGACATAGTGACACTGCGGACAGGGGAGGTGAAGTGG TCGGTGGGTGAGCACCCTGGCCAGGAGTGAGGGGCCGGCCATCCCTGCGCCCCCGGGCCC AGCCTGCTGGACCCTCATTGACTGCTTCAGAGCCGCCTGGCTCCCAGCCCACCCCCCTTT CTCTGGAGCCCCTGTCAGCCTCCAAAGCTGGCCAGCCAGATCCGCCTGTCCCTCCCGCCC TTGGTCCCCAACTCTCACCGGAGGGACTGGAGTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 650-769, - strand, RNAz p=0.583632 | |
| 816-930, - strand, RNAz p=0.910433 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 650-769, - strand, RNAz p=0.583632 | |
| 816-930, - strand, RNAz p=0.910433 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr19 (40559061-40558936) | |
| 1-132, gnl|canFam2|chr9 (14970359-14970744) | |
| 1-132, gnl|hg17|chr17 (59363161-59363538) | |
| 1-132, gnl|Hg17|chr17 (59363417-59363285) | |
| 1-132, gnl|loxAfr1|scaffold_35896 (11755-11426) | |
| 1-132, gnl|mm7|chr11 (106423317-106423701) | |
| 1-132, gnl|Mm7|chr11 (106423572-106423457) | |
| 1-132, gnl|monDom2|scaffold_18 (35598438-35598122) | |
| 1-132, gnl|oryCun1|scaffold_215464 (109165-109570) | |
| 1-132, gnl|panTro1|chr19 (45782840-45782462) | |
| 1-132, gnl|rheMac2|chr16 (59487508-59487885) | |
| 1-132, gnl|rn3|chr10 (95720402-95720766) | |
| 172-491, gnl|bosTau2|chr19 (40557301-40556982) | |
| 172-491, gnl|canFam2|chr9 (14968739-14969041) | |
| 172-491, gnl|dasNov1|scaffold_11277 (61609-61914) | |
| 172-491, gnl|echTel1|scaffold_323535 (45398-45088) | |
| 172-491, gnl|fr1|chrUn (50140164-50139879) | |
| 172-491, gnl|hg17|chr17 (59361154-59361465) | |
| 172-491, gnl|Hg17|chr17 (59361484-59361165) | |
| 172-491, gnl|loxAfr1|scaffold_35896 (14024-13723) | |
| 172-491, gnl|mm7|chr11 (106421662-106421970) | |
| 172-491, gnl|Mm7|chr11 (106421991-106421673) | |
| 172-491, gnl|monDom2|scaffold_18 (35608147-35607836) | |
| 172-491, gnl|oryCun1|scaffold_215464 (107402-107712) | |
| 172-491, gnl|panTro1|chr19 (45784860-45784549) | |
| 172-491, gnl|rheMac2|chr16 (59485515-59485829) | |
| 172-491, gnl|rn3|chr10 (95718785-95719093) | |
| 650-930, gnl|bosTau2|chr19 (40556200-40555934) | |
| 650-930, gnl|Hg17|chr17 (59360418-59360141) | |
| 650-930, gnl|Mm7|chr11 (106420948-106420682) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr19 (40559061-40558936) | |
| 1-132, gnl|canFam2|chr9 (14970359-14970744) | |
| 1-132, gnl|hg17|chr17 (59363161-59363538) | |
| 1-132, gnl|Hg17|chr17 (59363417-59363285) | |
| 1-132, gnl|loxAfr1|scaffold_35896 (11755-11426) | |
| 1-132, gnl|mm7|chr11 (106423317-106423701) | |
| 1-132, gnl|Mm7|chr11 (106423572-106423457) | |
| 1-132, gnl|monDom2|scaffold_18 (35598438-35598122) | |
| 1-132, gnl|oryCun1|scaffold_215464 (109165-109570) | |
| 1-132, gnl|panTro1|chr19 (45782840-45782462) | |
| 1-132, gnl|rheMac2|chr16 (59487508-59487885) | |
| 1-132, gnl|rn3|chr10 (95720402-95720766) | |
| 172-491, gnl|bosTau2|chr19 (40557301-40556982) | |
| 172-491, gnl|canFam2|chr9 (14968739-14969041) | |
| 172-491, gnl|dasNov1|scaffold_11277 (61609-61914) | |
| 172-491, gnl|echTel1|scaffold_323535 (45398-45088) | |
| 172-491, gnl|fr1|chrUn (50140164-50139879) | |
| 172-491, gnl|hg17|chr17 (59361154-59361465) | |
| 172-491, gnl|Hg17|chr17 (59361484-59361165) | |
| 172-491, gnl|loxAfr1|scaffold_35896 (14024-13723) | |
| 172-491, gnl|mm7|chr11 (106421662-106421970) | |
| 172-491, gnl|Mm7|chr11 (106421991-106421673) | |
| 172-491, gnl|monDom2|scaffold_18 (35608147-35607836) | |
| 172-491, gnl|oryCun1|scaffold_215464 (107402-107712) | |
| 172-491, gnl|panTro1|chr19 (45784860-45784549) | |
| 172-491, gnl|rheMac2|chr16 (59485515-59485829) | |
| 172-491, gnl|rn3|chr10 (95718785-95719093) | |
| 650-930, gnl|bosTau2|chr19 (40556200-40555934) | |
| 650-930, gnl|Hg17|chr17 (59360418-59360141) | |
| 650-930, gnl|Mm7|chr11 (106420948-106420682) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| lnt (0.284616) | |
| cly (0.241284) | |
| ill (0.175593) | |
| cag (0.151194) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.284616) | |
| cly (0.241284) | |
| ill (0.175593) | |
| cag (0.151194) | |
| med (0.116252) | |
| cty (0.10408) |