Non-Coding RNA Search

Ss1.1-LyN1-MLN01G100003.5

Sequence:


               
               TGACCAAACCTGGAGACGGGTGGCTGAGGGGCTTCATCTCAGCTGAGGAGCGAAGAGCCG
TAGGTACCGGCGGATCTCACAGCAGCTCGGGGTTTTTAGAACTTCAGCTATAAAAATGGG
CAGGATTTTCCTTGATCACATCGGTGGTACCCGTCTGTTTTCCTGTGCAAACTGCGATAC
GATCCTGACCAACCGCTCAGAGCTCATCTCCACTCGGTTCACAGGCGCCACTGGCAGAGC
ATTTCTTTTTAACAAGGTAGTTAACCTGCAGTACAGTGAAGTTCAAGACCGTGTCATGCT
CACTGGCCGCCACATGGTTCGAGATGTGAGCTGCAAAAACTGCAATAGCAAACTGGGATG
GATCTATGAGTTTGCCACTGAAGACAGCCAGCGTTATAAGGAAGGCCGTGTGATCCTGGA
ACGAGCTCTAGTTCGAGAAAGTGAGGGCTTTGAGGAGCATGTACCATCTGATAACTCTTG
AAGAAAAAAAGATAAATACATCTTTTCCCAGGTCTCCTTCACTGAAAACAAAAATCTACT
TACATACACTGTCACCTTAGCATCAGAGTCGGATTCATGAACTGCGGAACGAGGTTGTGA
GAATCTATGATGGAACCTTTCTTTCTTTCTTTCTTTTTTTTTTAAATTTTCTATTCTCCA
TCCAACAGCAGTGTGTAGAGAGATTATTATGCAGTTGCCGTTAATTATTTTTCCCCTATG
TTTACATCTTGAGGCAGAATAGTTTATCTGCAGCGATATGGTGGGCTATGTGAGGAAAAA
AATCTGGGCTATTAGAATGAAAAAGTGTTTTATGTAAATTTTGAAAGGAAAATGTGTCAG
GAGCATGGTTTTTAAATTTATTTGGGCTTCATTTTAAAACTTTTTTTTTAAAAAAACCCA
ATTATTTCACTTGATTTGCTAGCTTCAGAGAAGAGATCCGAATTTGTGACCAGCGCTAAA
GGTTCAGTGTTAGTATGGCTTGTGCTGGCCATTGTGCCATATTCTTGTTGGAGATGAACC
GTAGCATCAGAGCCCATTCTTCCTTGTCAGTCTTGACCCAAAGATGTCACCATTCCTAGT
TATTTGTCACCACATAATTGGTGTTGATTGGAAACTTTTCCTGATATGGGGCAGAACTGC
TTGGTTGTCTTTTCCATGTAACTTAAGCATAGTAATATAAATAAAGTAATAGTTGGATGT
TTTTGGTCCTGTGTTGCTTTTAAAATCACCTTTTAAAAGAGCAGAATATTTGATTAGTTA
TTTGCATAGTAGTTTTTCTTTTCATCTCTTAAGCTAAGTTGACTTTGTATGAGATACTAC
TTTGTTTAAAGCATACTGTTTAAATCCACAGTATTGCATTTAGAAACCAGTTAACAGAAT
GTCAGTGTGCATTCATGCAGAAAGCATTTCATCTGCATCTGTTTTAAAGGGAGGGAAATG
AAGCAGCCTATCTAAAAATACTGCTTTGCAAAGCATTTCAGCCTATCCTTCTCAGTTTTG
CATTGATTTTGACAAGTCTGTAGAGCCTATTACATCAAAAGCACTAGATCTCCTAGCGTT
ATTTTCTCAGATCTTCCCTCAGAAGTTCAGCTGTTGAAATCAAAACTGTACTTGGTCCCT
TCAAGTGGAATGGGATCAAATTTGACTCAGGGGGTTATTTTAACCCAAAATTTACAACAT
TGTGAAGTATTAAAATATAAATGTTTCTTTATCCAAACTATTTCTAGATATTCTAGTATT
TGTTTTTGGTGGAATAAATGGCATTAAAATTGGCTAACTACCTAATGAATGGATGTTTGC
TCAACTTCTAGGCCTTTGTCTAGAGATGAAATTTGCCTCAAATTAATTAGGAAAGTCTTT
CTGTCATTTATATTAGAAGTGACTTCTGAGTACAGTTAGGATTAAGTTTCTCTTATTTGC
CTTTGAGCCCTTGGTTAGAGGCATAGGTCTCTGATTTGGTAGGTGTATAATATTGCATTT
GAGATACATGGACACAAATTCTTCTCTTTCATTCACCGTGGACTAAATCTTCATTAAGAA
ACAACATTGATTTCCATCCTGGCCTTTGATTATATGCAGATTCCTAGTAGCATGCCTTAC
TTATAGCACTATGTGCATTTGCTGTCACAATAAAGTATATTTTGTCTTGCAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCAAACCTGGAGACGGGTGGCTGAGGGGCTTCATCTCAGCTGAGGAGCGAAGAGCCG
TAGGTACCGGCGGATCTCACAGCAGCTCGGGGTTTTTAGAACTTCAGCTATAAAAATGGG
CAGGATTTTCCTTGATCACATCGGTGGTACCCGTCTGTTTTCCTGTGCAAACTGCGATAC
GATCCTGACCAACCGCTCAGAGCTCATCTCCACTCGGTTCACAGGCGCCACTGGCAGAGC
ATTTCTTTTTAACAAGGTAGTTAACCTGCAGTACAGTGAAGTTCAAGACCGTGTCATGCT
CACTGGCCGCCACATGGTTCGAGATGTGAGCTGCAAAAACTGCAATAGCAAACTGGGATG
GATCTATGAGTTTGCCACTGAAGACAGCCAGCGTTATAAGGAAGGCCGTGTGATCCTGGA
ACGAGCTCTAGTTCGAGAAAGTGAGGGCTTTGAGGAGCATGTACCATCTGATAACTCTTG
AAGAAAAAAAGATAAATACATCTTTTCCCAGGTCTCCTTCACTGAAAACAAAAATCTACT
TACATACACTGTCACCTTAGCATCAGAGTCGGATTCATGAACTGCGGAACGAGGTTGTGA
GAATCTATGATGGAACCTTTCTTTCTTTCTTTCTTTTTTTTTTAAATTTTCTATTCTCCA
TCCAACAGCAGTGTGTAGAGAGATTATTATGCAGTTGCCGTTAATTATTTTTCCCCTATG
TTTACATCTTGAGGCAGAATAGTTTATCTGCAGCGATATGGTGGGCTATGTGAGGAAAAA
AATCTGGGCTATTAGAATGAAAAAGTGTTTTATGTAAATTTTGAAAGGAAAATGTGTCAG
GAGCATGGTTTTTAAATTTATTTGGGCTTCATTTTAAAACTTTTTTTTTAAAAAAACCCA
ATTATTTCACTTGATTTGCTAGCTTCAGAGAAGAGATCCGAATTTGTGACCAGCGCTAAA
GGTTCAGTGTTAGTATGGCTTGTGCTGGCCATTGTGCCATATTCTTGTTGGAGATGAACC
GTAGCATCAGAGCCCATTCTTCCTTGTCAGTCTTGACCCAAAGATGTCACCATTCCTAGT
TATTTGTCACCACATAATTGGTGTTGATTGGAAACTTTTCCTGATATGGGGCAGAACTGC
TTGGTTGTCTTTTCCATGTAACTTAAGCATAGTAATATAAATAAAGTAATAGTTGGATGT
TTTTGGTCCTGTGTTGCTTTTAAAATCACCTTTTAAAAGAGCAGAATATTTGATTAGTTA
TTTGCATAGTAGTTTTTCTTTTCATCTCTTAAGCTAAGTTGACTTTGTATGAGATACTAC
TTTGTTTAAAGCATACTGTTTAAATCCACAGTATTGCATTTAGAAACCAGTTAACAGAAT
GTCAGTGTGCATTCATGCAGAAAGCATTTCATCTGCATCTGTTTTAAAGGGAGGGAAATG
AAGCAGCCTATCTAAAAATACTGCTTTGCAAAGCATTTCAGCCTATCCTTCTCAGTTTTG
CATTGATTTTGACAAGTCTGTAGAGCCTATTACATCAAAAGCACTAGATCTCCTAGCGTT
ATTTTCTCAGATCTTCCCTCAGAAGTTCAGCTGTTGAAATCAAAACTGTACTTGGTCCCT
TCAAGTGGAATGGGATCAAATTTGACTCAGGGGGTTATTTTAACCCAAAATTTACAACAT
TGTGAAGTATTAAAATATAAATGTTTCTTTATCCAAACTATTTCTAGATATTCTAGTATT
TGTTTTTGGTGGAATAAATGGCATTAAAATTGGCTAACTACCTAATGAATGGATGTTTGC
TCAACTTCTAGGCCTTTGTCTAGAGATGAAATTTGCCTCAAATTAATTAGGAAAGTCTTT
CTGTCATTTATATTAGAAGTGACTTCTGAGTACAGTTAGGATTAAGTTTCTCTTATTTGC
CTTTGAGCCCTTGGTTAGAGGCATAGGTCTCTGATTTGGTAGGTGTATAATATTGCATTT
GAGATACATGGACACAAATTCTTCTCTTTCATTCACCGTGGACTAAATCTTCATTAAGAA
ACAACATTGATTTCCATCCTGGCCTTTGATTATATGCAGATTCCTAGTAGCATGCCTTAC
TTATAGCACTATGTGCATTTGCTGTCACAATAAAGTATATTTTGTCTTGCAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62822231|gb|AAY14780.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822231|gb|AAY14780.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               283-442, - strand, RNAz p=0.90859
               

               
               1036-1154, - strand, RNAz p=0.925758

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-442, - strand, RNAz p=0.90859
               

               
               1036-1154, - strand, RNAz p=0.925758

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-1197, gnl|bosTau2|chr13 (9524300-9523147)
               

               
               40-1197, gnl|Hg17|chr2 (30291144-30294067)
               

               
               40-1197, gnl|Mm7|chr17 (71129290-71132525)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-1197, gnl|bosTau2|chr13 (9524300-9523147)
               

               
               40-1197, gnl|Hg17|chr2 (30291144-30294067)
               

               
               40-1197, gnl|Mm7|chr17 (71129290-71132525)

Expressed library(ies): 47 entry(ies)

More info

Expressed library(ies): 47 entry(ies)

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               sug (1.01833)
               

               
               vin (0.997672)
               

               
               fco (0.943248)
               

               
               cty (0.936719)
               

               
               lyg (0.798616)
               

               
               liv (0.731422)
               

               
               clu (0.717875)
               

               
               ste (0.676041)
               

               
               mga (0.64082)
               

               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               bla (0.373042)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               cbl (0.344392)
               

               
               jej (0.296765)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (1.01833)
               

               
               vin (0.997672)
               

               
               fco (0.943248)
               

               
               cty (0.936719)
               

               
               lyg (0.798616)
               

               
               liv (0.731422)
               

               
               clu (0.717875)
               

               
               ste (0.676041)
               

               
               mga (0.64082)
               

               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               bla (0.373042)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               cbl (0.344392)
               

               
               jej (0.296765)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	283-442, - strand, RNAz p=0.90859
	1036-1154, - strand, RNAz p=0.925758

	40-1197, gnl\|bosTau2\|chr13 (9524300-9523147)
	40-1197, gnl\|Hg17\|chr2 (30291144-30294067)
	40-1197, gnl\|Mm7\|chr17 (71129290-71132525)

	sug (1.01833)
	vin (0.997672)
	fco (0.943248)
	cty (0.936719)
	lyg (0.798616)
	liv (0.731422)
	clu (0.717875)
	ste (0.676041)
	mga (0.64082)
	pro (0.512033)
	cbe (0.478469)
	mgp (0.461361)
	bla (0.373042)
	mgm (0.360685)
	fty (0.351679)
	cbl (0.344392)
	jej (0.296765)
	spl (0.286369)
	fce (0.271592)
	nmm (0.265604)
	ret (0.257467)
	pgl (0.236967)
	ebs (0.236602)
	pan (0.23596)
	spc (0.226732)
	nms (0.213858)
	mas (0.210305)
	tes (0.207814)
	hea (0.204499)
	sag (0.182715)
	ill (0.175593)
	cut (0.169924)
	fhi (0.169578)
	tbr (0.154178)
	lun (0.150489)
	bfe (0.149858)
	hyp (0.142837)
	lnt (0.142308)
	ssp (0.13552)
	ute (0.132784)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	cly (0.120642)
	jca (0.11396)
	ldo (0.0970026)