Ss1.1-LyN1-MLN01G100009.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAATGAGTATAACACTACAGAAGATTGGAGTCTTATTATGGACATATGCGATAAAGTTG GAAGCACTCCTAATGGAGCAAAAGATTGCCTAAAAGCCATAATGAAAAGAGTAAACCATA AAGTTCCTCATGTTGCTCTGCAGGCATTGACTCTTCTTGGGGCTTGTGTGGCAAACTGTG GAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACAGAAGTACGTGCTGTGA TAAAAAATAAGGCTCATCCTAAAGTATGTGAAAAACTGAAATCTTTAATGGTAGAGTGGT CAGAAGAATTTCAGAAGGACCCACAGTTTAGTCTAATATCTGCAACTATTAAATCTATGA AAGAAGAAGGAATTACTTTTCCTCCAGCAGGTTCTCAGACTGTCTCAGCCGCTGCCAAGA ATGGAATGTCATCAAACAAAAACAAAGAAGATGAAGACATAGCTAAAGCTATTGAATTAT CATTGCAAGAGCAGAAGCAGCAGCACACAGAAACAAAATCCTTATATCCATCTGCAGAAA TTCAGTTAAATAATAAAGTTGCAAGGAAAGTGAGAGCGTTATATGATTTTGAAGCCGTTG AGGACAATGAACTCACCTTTAAACATGGTGAAATTATTATTGTTTTGGATGACAGTGGTG CCAATTGGTGGAAAGGAGAAAATCACAGAGGAATAGGACTCTTCCCATCTAATTTTGTAA CAACTAATTTAAACATAGAATCTGAGGCAGCAGCTGTGGACAAATTGAATATAATTGAGG AGGAGGAGGAGGAAAATAAGAAATCAGAGCCTGAGCCTGTTTATATAGATGAGGATAAAA TGGATAGAGCCCTGCAGGTACTACAGAGTATAGATCCAACAGATTCAAAACCAGACTCCC AGGACCTCTTGGACTTAGAAGACATTTGCCAACAGATGGGTCCAATGATAGATGAAAAAC TTGAAGAGATTGATAGGAAGCATTCAGAATTGTCTGAATTGAATGTAAAAGTCTTGGAGG CTCTGGAACTGTATAACAAGTTGGTGAACGAATCTCCCGTATATTCAGTCTATTCAAAGC TGCATCATTCAGGACATTACCCACCTTCATCAGCTGGGGTTCCAGTGCAGACATATCCAG TTCAGCCACATGGTGGAAACTATATGGGTCAAAGTATTCACCAAGTCACCGTTGCCCAGA GCTACAGCCTAGGACCAGATCAAATCGGTCCACTGAGATCTCTGCCTCCAAGTGTGAATT CCTCAGTGACAACACAGCCTGGTCAAACTCCATATTTAAGCGCTGGACAAGACACTGTTT CCAATTCTGCGTATATGAACCAGAACTCTAACCTTCAATCAGCTACTGGATATGTCATCT TGCCAGAACACTACTTCCAATTTGCCGCAGTTGGCAGGCTTTCCGGTGGCAGTTCCAGCT CATTCCATTGCACAGCAGCAAGCAAATTACCATCAGCAGCAGCCTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAATGAGTATAACACTACAGAAGATTGGAGTCTTATTATGGACATATGCGATAAAGTTG GAAGCACTCCTAATGGAGCAAAAGATTGCCTAAAAGCCATAATGAAAAGAGTAAACCATA AAGTTCCTCATGTTGCTCTGCAGGCATTGACTCTTCTTGGGGCTTGTGTGGCAAACTGTG GAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACAGAAGTACGTGCTGTGA TAAAAAATAAGGCTCATCCTAAAGTATGTGAAAAACTGAAATCTTTAATGGTAGAGTGGT CAGAAGAATTTCAGAAGGACCCACAGTTTAGTCTAATATCTGCAACTATTAAATCTATGA AAGAAGAAGGAATTACTTTTCCTCCAGCAGGTTCTCAGACTGTCTCAGCCGCTGCCAAGA ATGGAATGTCATCAAACAAAAACAAAGAAGATGAAGACATAGCTAAAGCTATTGAATTAT CATTGCAAGAGCAGAAGCAGCAGCACACAGAAACAAAATCCTTATATCCATCTGCAGAAA TTCAGTTAAATAATAAAGTTGCAAGGAAAGTGAGAGCGTTATATGATTTTGAAGCCGTTG AGGACAATGAACTCACCTTTAAACATGGTGAAATTATTATTGTTTTGGATGACAGTGGTG CCAATTGGTGGAAAGGAGAAAATCACAGAGGAATAGGACTCTTCCCATCTAATTTTGTAA CAACTAATTTAAACATAGAATCTGAGGCAGCAGCTGTGGACAAATTGAATATAATTGAGG AGGAGGAGGAGGAAAATAAGAAATCAGAGCCTGAGCCTGTTTATATAGATGAGGATAAAA TGGATAGAGCCCTGCAGGTACTACAGAGTATAGATCCAACAGATTCAAAACCAGACTCCC AGGACCTCTTGGACTTAGAAGACATTTGCCAACAGATGGGTCCAATGATAGATGAAAAAC TTGAAGAGATTGATAGGAAGCATTCAGAATTGTCTGAATTGAATGTAAAAGTCTTGGAGG CTCTGGAACTGTATAACAAGTTGGTGAACGAATCTCCCGTATATTCAGTCTATTCAAAGC TGCATCATTCAGGACATTACCCACCTTCATCAGCTGGGGTTCCAGTGCAGACATATCCAG TTCAGCCACATGGTGGAAACTATATGGGTCAAAGTATTCACCAAGTCACCGTTGCCCAGA GCTACAGCCTAGGACCAGATCAAATCGGTCCACTGAGATCTCTGCCTCCAAGTGTGAATT CCTCAGTGACAACACAGCCTGGTCAAACTCCATATTTAAGCGCTGGACAAGACACTGTTT CCAATTCTGCGTATATGAACCAGAACTCTAACCTTCAATCAGCTACTGGATATGTCATCT TGCCAGAACACTACTTCCAATTTGCCGCAGTTGGCAGGCTTTCCGGTGGCAGTTCCAGCT CATTCCATTGCACAGCAGCAAGCAAATTACCATCAGCAGCAGCCTCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 546-665, + strand, RNAz p=0.84071 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 546-665, + strand, RNAz p=0.84071 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 249-398, gnl|bosTau2|chr2 (29150265-29150414) | |
| 249-398, gnl|canFam2|chr19 (56267174-56267351) | |
| 249-398, gnl|danRer3|chrNA (105702187-105702359) | |
| 249-398, gnl|dasNov1|scaffold_66849 (4493-4353) | |
| 249-398, gnl|echTel1|scaffold_281878 (44171-44345) | |
| 249-398, gnl|fr1|chrUn (248142043-248142193) | |
| 249-398, gnl|galGal2|chr7 (36071973-36072139) | |
| 249-398, gnl|hg17|chr2 (152829156-152829333) | |
| 249-398, gnl|Hg17|chr2 (152829333-152829184) | |
| 249-398, gnl|mm7|chr2 (52723709-52723885) | |
| 249-398, gnl|Mm7|chr2 (52723885-52723736) | |
| 249-398, gnl|monDom2|scaffold_2 (43290003-43290155) | |
| 249-398, gnl|panTro1|chr13 (41892592-41892769) | |
| 249-398, gnl|rheMac2|chr12 (15818629-15818806) | |
| 249-398, gnl|rn3|chr3 (34130280-34130453) | |
| 249-398, gnl|tetNig1|chrUn_random (17061859-17061706) | |
| 249-398, gnl|xenTro1|scaffold_524 (184780-184935) | |
| 467-694, gnl|bosTau2|chr2 (29153292-29153518) | |
| 467-694, gnl|canFam2|chr19 (56264807-56264941) | |
| 467-694, gnl|danRer3|chrNA (105697402-105697533) | |
| 467-694, gnl|dasNov1|scaffold_57267 (9748-9881) | |
| 467-694, gnl|echTel1|scaffold_288747 (38411-38551) | |
| 467-694, gnl|fr1|chrUn (248141065-248141173) | |
| 467-694, gnl|galGal2|chr7 (36069721-36069849) | |
| 467-694, gnl|hg17|chr2 (152825841-152825975) | |
| 467-694, gnl|mm7|chr2 (52722121-52722255) | |
| 467-694, gnl|monDom2|scaffold_2 (43284699-43284836) | |
| 467-694, gnl|oryCun1|scaffold_200575 (4635-4501) | |
| 467-694, gnl|panTro1|chr13 (41889283-41889417) | |
| 467-694, gnl|rheMac2|chr12 (15815317-15815451) | |
| 467-694, gnl|rn3|chr3 (34127741-34127875) | |
| 467-694, gnl|tetNig1|chrUn_random (17062620-17062522) | |
| 467-694, gnl|xenTro1|scaffold_524 (181854-181991) | |
| 1128-1300, gnl|bosTau2|chr2 (29171753-29171925) | |
| 1128-1300, gnl|Hg17|chr2 (152805960-152805788) | |
| 1128-1300, gnl|Mm7|chr2 (52707485-52707316) | |
| 1367-1488, gnl|bosTau2|chr2 (29173912-29174033) | |
| 1367-1488, gnl|canFam2|chr19 (56243423-56243681) | |
| 1367-1488, gnl|danRer3|chrNA (105690809-105691031) | |
| 1367-1488, gnl|dasNov1|scaffold_5237 (41908-42166) | |
| 1367-1488, gnl|echTel1|scaffold_241548 (13424-13165) | |
| 1367-1488, gnl|fr1|chrUn (248139062-248139284) | |
| 1367-1488, gnl|galGal2|chr7 (36063674-36063927) | |
| 1367-1488, gnl|hg17|chr2 (152802590-152802848) | |
| 1367-1488, gnl|Hg17|chr2 (152802720-152802602) | |
| 1367-1488, gnl|loxAfr1|scaffold_9945 (24259-24013) | |
| 1367-1488, gnl|mm7|chr2 (52702014-52702272) | |
| 1367-1488, gnl|Mm7|chr2 (52702144-52702026) | |
| 1367-1488, gnl|monDom2|scaffold_2 (43269014-43269268) | |
| 1367-1488, gnl|panTro1|chr13 (41865678-41865936) | |
| 1367-1488, gnl|rheMac2|chr12 (15791353-15791611) | |
| 1367-1488, gnl|rn3|chr3 (34109519-34109777) | |
| 1367-1488, gnl|xenTro1|scaffold_524 (173761-174001) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 249-398, gnl|bosTau2|chr2 (29150265-29150414) | |
| 249-398, gnl|canFam2|chr19 (56267174-56267351) | |
| 249-398, gnl|danRer3|chrNA (105702187-105702359) | |
| 249-398, gnl|dasNov1|scaffold_66849 (4493-4353) | |
| 249-398, gnl|echTel1|scaffold_281878 (44171-44345) | |
| 249-398, gnl|fr1|chrUn (248142043-248142193) | |
| 249-398, gnl|galGal2|chr7 (36071973-36072139) | |
| 249-398, gnl|hg17|chr2 (152829156-152829333) | |
| 249-398, gnl|Hg17|chr2 (152829333-152829184) | |
| 249-398, gnl|mm7|chr2 (52723709-52723885) | |
| 249-398, gnl|Mm7|chr2 (52723885-52723736) | |
| 249-398, gnl|monDom2|scaffold_2 (43290003-43290155) | |
| 249-398, gnl|panTro1|chr13 (41892592-41892769) | |
| 249-398, gnl|rheMac2|chr12 (15818629-15818806) | |
| 249-398, gnl|rn3|chr3 (34130280-34130453) | |
| 249-398, gnl|tetNig1|chrUn_random (17061859-17061706) | |
| 249-398, gnl|xenTro1|scaffold_524 (184780-184935) | |
| 467-694, gnl|bosTau2|chr2 (29153292-29153518) | |
| 467-694, gnl|canFam2|chr19 (56264807-56264941) | |
| 467-694, gnl|danRer3|chrNA (105697402-105697533) | |
| 467-694, gnl|dasNov1|scaffold_57267 (9748-9881) | |
| 467-694, gnl|echTel1|scaffold_288747 (38411-38551) | |
| 467-694, gnl|fr1|chrUn (248141065-248141173) | |
| 467-694, gnl|galGal2|chr7 (36069721-36069849) | |
| 467-694, gnl|hg17|chr2 (152825841-152825975) | |
| 467-694, gnl|mm7|chr2 (52722121-52722255) | |
| 467-694, gnl|monDom2|scaffold_2 (43284699-43284836) | |
| 467-694, gnl|oryCun1|scaffold_200575 (4635-4501) | |
| 467-694, gnl|panTro1|chr13 (41889283-41889417) | |
| 467-694, gnl|rheMac2|chr12 (15815317-15815451) | |
| 467-694, gnl|rn3|chr3 (34127741-34127875) | |
| 467-694, gnl|tetNig1|chrUn_random (17062620-17062522) | |
| 467-694, gnl|xenTro1|scaffold_524 (181854-181991) | |
| 1128-1300, gnl|bosTau2|chr2 (29171753-29171925) | |
| 1128-1300, gnl|Hg17|chr2 (152805960-152805788) | |
| 1128-1300, gnl|Mm7|chr2 (52707485-52707316) | |
| 1367-1488, gnl|bosTau2|chr2 (29173912-29174033) | |
| 1367-1488, gnl|canFam2|chr19 (56243423-56243681) | |
| 1367-1488, gnl|danRer3|chrNA (105690809-105691031) | |
| 1367-1488, gnl|dasNov1|scaffold_5237 (41908-42166) | |
| 1367-1488, gnl|echTel1|scaffold_241548 (13424-13165) | |
| 1367-1488, gnl|fr1|chrUn (248139062-248139284) | |
| 1367-1488, gnl|galGal2|chr7 (36063674-36063927) | |
| 1367-1488, gnl|hg17|chr2 (152802590-152802848) | |
| 1367-1488, gnl|Hg17|chr2 (152802720-152802602) | |
| 1367-1488, gnl|loxAfr1|scaffold_9945 (24259-24013) | |
| 1367-1488, gnl|mm7|chr2 (52702014-52702272) | |
| 1367-1488, gnl|Mm7|chr2 (52702144-52702026) | |
| 1367-1488, gnl|monDom2|scaffold_2 (43269014-43269268) | |
| 1367-1488, gnl|panTro1|chr13 (41865678-41865936) | |
| 1367-1488, gnl|rheMac2|chr12 (15791353-15791611) | |
| 1367-1488, gnl|rn3|chr3 (34109519-34109777) | |
| 1367-1488, gnl|xenTro1|scaffold_524 (173761-174001) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| cst (0.140036) | |
| pla (0.133672) |