Non-Coding RNA Search

Ss1.1-LyN1-MLN01G100093.5

Sequence:


               
               CAGCCTTTGAAAAAATTCCATTTGAGAGAGCTTTTAGGAGGCCGAATGCTGACTTCACAA
CCAACAGCATCACAATCCAGTACTGGAATGCTGTCAGCCACCGGGCCCCTGCCATCATCT
ATGACTTTTATCTGCGGCTCACGGGGAGGAAACCCAGGATGACAAAGCTCATGAATCGGC
TTTTAAGAACTGTTTCCATGCTGGAGTATTTCATCAACCGGAGTTGGGAATGGAGCACAG
ACAACACCGAAATGCTGATGTCGGAGCTGAGTCCCGAGGACCAGAGAGTATTCAACTTTG
ATGTGCGCCAGTTGAACTGGTTGGAATACATTGAAAATTATGTTTTAGGAGTTAAGAAGT
ACTTACTGAAAGAGGATATGGCTGGGATCCCAAAAGCAAAGCAACACTTAAAAAGGCTCC
GAAATATTCACTACCTCTTTAATACTGCCCTCTTCCTCATCGCCTGGCGCCTTCTCATTG
CAAGATCTCAGGTGGCTCGGAACGTGTGGTTCTTCATCGTGAGCTTCTGTTACAAACTCC
TCTCCTACTTTAGGGCGTCCAGCACACTCAAGGTCTAAGAAAACTTGGCAAAGGTCTCTT
ACCTGGAACCTCTCAGATACCTCCAAAACAGCAACTGTAGTTCTCAAGATTAGAAAGTAA
TAGTTATGCCCAAGTTCGTTACTTGTCAAATGTGCTGTCATGTATTCATCCTTATTTAAC
TATATATTTTTATTTCAGTGAGAGAAGGAAAGCATATCCTAGTCTATCATCATACGTGTT
TTAGGAAAAAATTGTTTCCTAATTCTCTGCCCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTTTGAAAAAATTCCATTTGAGAGAGCTTTTAGGAGGCCGAATGCTGACTTCACAA
CCAACAGCATCACAATCCAGTACTGGAATGCTGTCAGCCACCGGGCCCCTGCCATCATCT
ATGACTTTTATCTGCGGCTCACGGGGAGGAAACCCAGGATGACAAAGCTCATGAATCGGC
TTTTAAGAACTGTTTCCATGCTGGAGTATTTCATCAACCGGAGTTGGGAATGGAGCACAG
ACAACACCGAAATGCTGATGTCGGAGCTGAGTCCCGAGGACCAGAGAGTATTCAACTTTG
ATGTGCGCCAGTTGAACTGGTTGGAATACATTGAAAATTATGTTTTAGGAGTTAAGAAGT
ACTTACTGAAAGAGGATATGGCTGGGATCCCAAAAGCAAAGCAACACTTAAAAAGGCTCC
GAAATATTCACTACCTCTTTAATACTGCCCTCTTCCTCATCGCCTGGCGCCTTCTCATTG
CAAGATCTCAGGTGGCTCGGAACGTGTGGTTCTTCATCGTGAGCTTCTGTTACAAACTCC
TCTCCTACTTTAGGGCGTCCAGCACACTCAAGGTCTAAGAAAACTTGGCAAAGGTCTCTT
ACCTGGAACCTCTCAGATACCTCCAAAACAGCAACTGTAGTTCTCAAGATTAGAAAGTAA
TAGTTATGCCCAAGTTCGTTACTTGTCAAATGTGCTGTCATGTATTCATCCTTATTTAAC
TATATATTTTTATTTCAGTGAGAGAAGGAAAGCATATCCTAGTCTATCATCATACGTGTT
TTAGGAAAAAATTGTTTCCTAATTCTCTGCCCTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61833003|ref|XP_590004.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833003|ref|XP_590004.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-166, gnl|bosTau2|chr5 (49359820-49359984)
               

               
               1-166, gnl|canFam2|chr27 (21682223-21681845)
               

               
               1-166, gnl|echTel1|scaffold_238809 (4775-4462)
               

               
               1-166, gnl|Hg17|chr12 (29361056-29361220)
               

               
               1-166, gnl|hg17|chr14 (18460769-18461096)
               

               
               1-166, gnl|loxAfr1|scaffold_3585 (66706-66382)
               

               
               1-166, gnl|mm7|chr6 (148243813-148244103)
               

               
               1-166, gnl|Mm7|chr6 (148243908-148244072)
               

               
               1-166, gnl|monDom2|scaffold_71 (6003339-6003022)
               

               
               1-166, gnl|panTro1|chrUn_random (20621060-20620732)
               

               
               1-166, gnl|rheMac2|chr11 (29652445-29652751)
               

               
               1-166, gnl|rn3|chr4 (186031742-186032041)
               


               
               414-804, gnl|bosTau2|chr5 (49374068-49374462)
               

               
               414-804, gnl|Hg17|chr12 (29377830-29378219)
               

               
               414-804, gnl|Mm7|chr6 (148253363-148253815)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-166, gnl|bosTau2|chr5 (49359820-49359984)
               

               
               1-166, gnl|canFam2|chr27 (21682223-21681845)
               

               
               1-166, gnl|echTel1|scaffold_238809 (4775-4462)
               

               
               1-166, gnl|Hg17|chr12 (29361056-29361220)
               

               
               1-166, gnl|hg17|chr14 (18460769-18461096)
               

               
               1-166, gnl|loxAfr1|scaffold_3585 (66706-66382)
               

               
               1-166, gnl|mm7|chr6 (148243813-148244103)
               

               
               1-166, gnl|Mm7|chr6 (148243908-148244072)
               

               
               1-166, gnl|monDom2|scaffold_71 (6003339-6003022)
               

               
               1-166, gnl|panTro1|chrUn_random (20621060-20620732)
               

               
               1-166, gnl|rheMac2|chr11 (29652445-29652751)
               

               
               1-166, gnl|rn3|chr4 (186031742-186032041)
               


               
               414-804, gnl|bosTau2|chr5 (49374068-49374462)
               

               
               414-804, gnl|Hg17|chr12 (29377830-29378219)
               

               
               414-804, gnl|Mm7|chr6 (148253363-148253815)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-166, gnl\|bosTau2\|chr5 (49359820-49359984)
	1-166, gnl\|canFam2\|chr27 (21682223-21681845)
	1-166, gnl\|echTel1\|scaffold_238809 (4775-4462)
	1-166, gnl\|Hg17\|chr12 (29361056-29361220)
	1-166, gnl\|hg17\|chr14 (18460769-18461096)
	1-166, gnl\|loxAfr1\|scaffold_3585 (66706-66382)
	1-166, gnl\|mm7\|chr6 (148243813-148244103)
	1-166, gnl\|Mm7\|chr6 (148243908-148244072)
	1-166, gnl\|monDom2\|scaffold_71 (6003339-6003022)
	1-166, gnl\|panTro1\|chrUn_random (20621060-20620732)
	1-166, gnl\|rheMac2\|chr11 (29652445-29652751)
	1-166, gnl\|rn3\|chr4 (186031742-186032041)

	414-804, gnl\|bosTau2\|chr5 (49374068-49374462)
	414-804, gnl\|Hg17\|chr12 (29377830-29378219)
	414-804, gnl\|Mm7\|chr6 (148253363-148253815)