Non-Coding RNA Search

Ss1.1-LyN1-MLN01G110068.5

Sequence:


               
               CATCACTCCGTGATAGGGATAATTCCATGAATTCAGGAAAGATTTCCATAATCTTCAGAA
AAGGGGATTTTTCCCGAGCTCTGTGTACATGCCGATGAGCATGTTAATGAAAGACAGAGA
TAAAGCAAAGGGATCAAGACCAGGGCTGACCAGGGACAGGAGGAGGATAGGCTCCTGTCT
GTCTTCCCTCCTAAACGCAGTTCTTTGGAATCACCTTCCTGTGTTGGGCATGGAAGGGAG
CCATCAGCTGGAGAGAAACTCGGAAGATGTGACTTCAGGAGTCCTGGACAGGACACAACC
GTTAGCACTTCCAAGGTGTTCCAAGCAAATACAAAACAGAGGATTCAAATCTGAAGGGAG
ATTAGGTAGGCCTTGCAAGGGCAGGGTGTTCCATAGTGCCTCACAAAGCTGAGAACAGCA
GTGTTGCAGAGGCAGGTGAGGTAGGGGCAGGGGCGGGGCACAGGGAACGGAGCTGTTGGT
GCAAAGAGATGGCACCGTGTCTCATGTATGTGGTACTCACAGAATCTACACGCCAGTTCC
AGAACCCGAAGTTGGCGAACTGCCACAGGTGTAGGTGTTTGGACCCTGGAGTTTGTACTA
AGCTGAGGGCCTGGGCCGCTCCAGCTGCACAGCAGTCAAGGCCATGCCAGCTTCGTTCCT
CATGGGAAGCCAGTCTCTTGGGAGCTGCATGCCAGTTCCAGTTTAAGCAGTTCTGTTGTG
TTGTAAGAGGAAGACATTAAAGCCCATTTGATGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCACTCCGTGATAGGGATAATTCCATGAATTCAGGAAAGATTTCCATAATCTTCAGAA
AAGGGGATTTTTCCCGAGCTCTGTGTACATGCCGATGAGCATGTTAATGAAAGACAGAGA
TAAAGCAAAGGGATCAAGACCAGGGCTGACCAGGGACAGGAGGAGGATAGGCTCCTGTCT
GTCTTCCCTCCTAAACGCAGTTCTTTGGAATCACCTTCCTGTGTTGGGCATGGAAGGGAG
CCATCAGCTGGAGAGAAACTCGGAAGATGTGACTTCAGGAGTCCTGGACAGGACACAACC
GTTAGCACTTCCAAGGTGTTCCAAGCAAATACAAAACAGAGGATTCAAATCTGAAGGGAG
ATTAGGTAGGCCTTGCAAGGGCAGGGTGTTCCATAGTGCCTCACAAAGCTGAGAACAGCA
GTGTTGCAGAGGCAGGTGAGGTAGGGGCAGGGGCGGGGCACAGGGAACGGAGCTGTTGGT
GCAAAGAGATGGCACCGTGTCTCATGTATGTGGTACTCACAGAATCTACACGCCAGTTCC
AGAACCCGAAGTTGGCGAACTGCCACAGGTGTAGGTGTTTGGACCCTGGAGTTTGTACTA
AGCTGAGGGCCTGGGCCGCTCCAGCTGCACAGCAGTCAAGGCCATGCCAGCTTCGTTCCT
CATGGGAAGCCAGTCTCTTGGGAGCTGCATGCCAGTTCCAGTTTAAGCAGTTCTGTTGTG
TTGTAAGAGGAAGACATTAAAGCCCATTTGATGACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-117, - strand, RNAz p=0.518453
               

               
               346-450, - strand, RNAz p=0.896077

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-117, - strand, RNAz p=0.518453
               

               
               346-450, - strand, RNAz p=0.896077

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-749, gnl|bosTau2|chr26 (9131910-9132641)
               

               
               1-749, gnl|canFam2|chr28 (14392830-14393395)
               

               
               1-749, gnl|dasNov1|scaffold_765 (54493-53906)
               

               
               1-749, gnl|echTel1|scaffold_319440 (40945-41499)
               

               
               1-749, gnl|Hg17|chr10 (99993907-99994633)
               

               
               1-749, gnl|hg17|chr12 (33762354-33762910)
               

               
               1-749, gnl|loxAfr1|scaffold_13447 (12816-13390)
               

               
               1-749, gnl|mm7|chr15 (90125705-90126289)
               

               
               1-749, gnl|Mm7|chr19 (42484547-42485232)
               

               
               1-749, gnl|monDom2|scaffold_24 (5755700-5755130)
               

               
               1-749, gnl|oryCun1|scaffold_1157 (9717-9145)
               

               
               1-749, gnl|panTro1|chrUn_random (33276213-33275654)
               

               
               1-749, gnl|rheMac2|chr11 (33940574-33941120)
               

               
               1-749, gnl|rn3|chr7 (128419700-128420276)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-749, gnl|bosTau2|chr26 (9131910-9132641)
               

               
               1-749, gnl|canFam2|chr28 (14392830-14393395)
               

               
               1-749, gnl|dasNov1|scaffold_765 (54493-53906)
               

               
               1-749, gnl|echTel1|scaffold_319440 (40945-41499)
               

               
               1-749, gnl|Hg17|chr10 (99993907-99994633)
               

               
               1-749, gnl|hg17|chr12 (33762354-33762910)
               

               
               1-749, gnl|loxAfr1|scaffold_13447 (12816-13390)
               

               
               1-749, gnl|mm7|chr15 (90125705-90126289)
               

               
               1-749, gnl|Mm7|chr19 (42484547-42485232)
               

               
               1-749, gnl|monDom2|scaffold_24 (5755700-5755130)
               

               
               1-749, gnl|oryCun1|scaffold_1157 (9717-9145)
               

               
               1-749, gnl|panTro1|chrUn_random (33276213-33275654)
               

               
               1-749, gnl|rheMac2|chr11 (33940574-33941120)
               

               
               1-749, gnl|rn3|chr7 (128419700-128420276)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nje (0.16592)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nje (0.16592)

	3-117, - strand, RNAz p=0.518453
	346-450, - strand, RNAz p=0.896077

	1-749, gnl\|bosTau2\|chr26 (9131910-9132641)
	1-749, gnl\|canFam2\|chr28 (14392830-14393395)
	1-749, gnl\|dasNov1\|scaffold_765 (54493-53906)
	1-749, gnl\|echTel1\|scaffold_319440 (40945-41499)
	1-749, gnl\|Hg17\|chr10 (99993907-99994633)
	1-749, gnl\|hg17\|chr12 (33762354-33762910)
	1-749, gnl\|loxAfr1\|scaffold_13447 (12816-13390)
	1-749, gnl\|mm7\|chr15 (90125705-90126289)
	1-749, gnl\|Mm7\|chr19 (42484547-42485232)
	1-749, gnl\|monDom2\|scaffold_24 (5755700-5755130)
	1-749, gnl\|oryCun1\|scaffold_1157 (9717-9145)
	1-749, gnl\|panTro1\|chrUn_random (33276213-33275654)
	1-749, gnl\|rheMac2\|chr11 (33940574-33941120)
	1-749, gnl\|rn3\|chr7 (128419700-128420276)