Non-Coding RNA Search

Ss1.1-LyN1-MLN01G110069.5

Sequence:


               
               GGAGCCTATCCGTCTCAGGTCTTCGAGTGCTTCGGAGCCGGCTCCGTGTGGTGTGCGGAG
GAGGCGTAGGCCCGGCGGCGTGGAGGTGCACTGCATGGTTCCTTGTCTCCACGGTGGCCT
TACAGCTGAAACATGGCTACGGATTGGCTGGGCAGTATTGTGTCCATGAACTGTGGAGAT
AGCTTGGGTGTCTATCAGGGAAGAGTATCAGCAGTTGATCAGGTCAGCCAGACCATTTCT
CTTACCCGGCCTTTCCACAATGGAGTGAAGTGCCTTGTGCCAGAAGTCACCTTCAGGGCA
GGTGACATTACGGAACTAAAAATTCTGGAGATACCAGGTCCTGGAGAAAACCAACATTTT
GGAGACCTTCATCAGGCAGAATTAGGCCCCTCTGGTGTTGGGTGCCAAGTAGGTATTGGT
CAGAATGGCATGGGCAAGTTGGTTAAAAAGCCAGCCTCTTCCAGCAGTGCCCCTCAGAAC
ATCCCTAAGAGGACAGATGTCAAGAGCCAAGATGTTGCCGTTTCTCCCCAGCAGCAGCAG
TGCTCAAAGAGCTATGTGGATAGGCACATGGAGTCCTTGAGTCAGTCCAAAAGCTTCCGG
CGTCGGCACAACTCTTGGTCATCTAGTAGCAGGCACCCAAATCAGGCAACTCCAAAGAAA
AGTGGCTTAAAGAATGGCCAAATGAAGAATAAAGATGATGAGTGCTTTGGGGATGATATT
GAGGAGATCCCAGACACAGATTTTGATTTTGAAGGGAACTTGGCCCTTTTTGACAAGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCTATCCGTCTCAGGTCTTCGAGTGCTTCGGAGCCGGCTCCGTGTGGTGTGCGGAG
GAGGCGTAGGCCCGGCGGCGTGGAGGTGCACTGCATGGTTCCTTGTCTCCACGGTGGCCT
TACAGCTGAAACATGGCTACGGATTGGCTGGGCAGTATTGTGTCCATGAACTGTGGAGAT
AGCTTGGGTGTCTATCAGGGAAGAGTATCAGCAGTTGATCAGGTCAGCCAGACCATTTCT
CTTACCCGGCCTTTCCACAATGGAGTGAAGTGCCTTGTGCCAGAAGTCACCTTCAGGGCA
GGTGACATTACGGAACTAAAAATTCTGGAGATACCAGGTCCTGGAGAAAACCAACATTTT
GGAGACCTTCATCAGGCAGAATTAGGCCCCTCTGGTGTTGGGTGCCAAGTAGGTATTGGT
CAGAATGGCATGGGCAAGTTGGTTAAAAAGCCAGCCTCTTCCAGCAGTGCCCCTCAGAAC
ATCCCTAAGAGGACAGATGTCAAGAGCCAAGATGTTGCCGTTTCTCCCCAGCAGCAGCAG
TGCTCAAAGAGCTATGTGGATAGGCACATGGAGTCCTTGAGTCAGTCCAAAAGCTTCCGG
CGTCGGCACAACTCTTGGTCATCTAGTAGCAGGCACCCAAATCAGGCAACTCCAAAGAAA
AGTGGCTTAAAGAATGGCCAAATGAAGAATAAAGATGATGAGTGCTTTGGGGATGATATT
GAGGAGATCCCAGACACAGATTTTGATTTTGAAGGGAACTTGGCCCTTTTTGACAAGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642929|ref|XP_510669.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642929|ref|XP_510669.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               292-410, + strand, RNAz p=0.907856

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               292-410, + strand, RNAz p=0.907856

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               292-617, gnl|bosTau2|chr21 (22850311-22849986)
               

               
               292-617, gnl|Hg17|chr15 (72751173-72750848)
               

               
               292-617, gnl|Mm7|chr9 (57743609-57743934)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               292-617, gnl|bosTau2|chr21 (22850311-22849986)
               

               
               292-617, gnl|Hg17|chr15 (72751173-72750848)
               

               
               292-617, gnl|Mm7|chr9 (57743609-57743934)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	292-617, gnl\|bosTau2\|chr21 (22850311-22849986)
	292-617, gnl\|Hg17\|chr15 (72751173-72750848)
	292-617, gnl\|Mm7\|chr9 (57743609-57743934)