Ss1.1-LyN1-MLN01G110078.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATCCTGCCGACACCCACTTTATCCCGCCATTCAGCGGCACCCCCACTTCAGGGCCCTG TTCGATCTCTCCACTCCAGTGCTGCTGTCCGGGGGCCTCTTCACCCAGGAGCTCTGGGAC CGCCTGGGCCAGCACAAAGCCCCTTATGGCTGGCAGGGGCTCTCCCGCCAAGCCATCGCC TCCACCCTGGGCCTCCTGAACGGCTCTGAGAGCTCCAGGCTGTTCGCCGTCTCCAGGCAG CGGCTTCCGCGCTGCATCCGGTGTGCTGTGGTGGGGAACGGGGGCATCCTGAATGGTTCC CGCCAGGGTCAGAACATCGATGCCCACGACTACGTGTTCAGACTCAACGGTGCTGTGACC AGAGGCTTCGAGGACGACGTGGGCACCAAGATCTCCTTCTACGGCTTCACCGTGAACACG ATGAAGAACTCCCTCCTCGCCTACGCCCACCTGGGCTTCACCTCCGTGCCGCAGGGACAG GACCTGCGCTATATCTTCATCCCCTCGGACATCCGAGACTACGTGATGCTGAGATCGGCC ATTCTGGGCGTGCCGGTCCCCGAGGGCCATGATAAAGGGGACAGGCCGCAGACCTACTTT GGACCAGAAGCCTCCGCCAGCAAATTCAAGCTACTCCATCCAGACTTCGCCCGCATCTTC ACCAAGTCACCTAGGGAGGGGGGATTGATCAATACAAAATTTGGAGACCTATATATGCCT AGTACTGGGGCCCTCATGCTGCTGACAGCTCTGCATACCTGTGACCAGGTTAGTGCCTAT GGCTTCATCACAAGCAACTACTGGAAATTTTCTGACCACTATTTCGAGCGAATAAAGAAG CCGCTGATATTCTATGTGAACCACGACCTGTCCCTGGAAGCCACCTTGTGGAAGGACCTG CATGAGGCCGGCATCCTCTGGCTGTACCAGCGCTGACCCAGAGGCCCCCACCCCCCCAAG ATCTTTGCTCCTGCAGAGCTGTGGCCCCTGGCCCCTCAAGTGGCCAAAATTGCCTGCTTG TTTTTTTCAGCCTGAAGGGCTCCAACCATCTTCAACATCCTTCTCCCCTCCAGAGGACAG AGTGGATCTCTAACTGTCACTGAAACGTGTCTCGGGGACATCCCACCTTGTCCTTGGCCC AAGACTCCCCTCTGGTCTGAGAGAGACAGCCCAACCCGGTCAAGGAACAATGGACTGACT GCTCTGCCGCAAGACACCACTCAAGATGAGACTGTGGCCCTCGTGGGCATGAGGCACAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATCCTGCCGACACCCACTTTATCCCGCCATTCAGCGGCACCCCCACTTCAGGGCCCTG TTCGATCTCTCCACTCCAGTGCTGCTGTCCGGGGGCCTCTTCACCCAGGAGCTCTGGGAC CGCCTGGGCCAGCACAAAGCCCCTTATGGCTGGCAGGGGCTCTCCCGCCAAGCCATCGCC TCCACCCTGGGCCTCCTGAACGGCTCTGAGAGCTCCAGGCTGTTCGCCGTCTCCAGGCAG CGGCTTCCGCGCTGCATCCGGTGTGCTGTGGTGGGGAACGGGGGCATCCTGAATGGTTCC CGCCAGGGTCAGAACATCGATGCCCACGACTACGTGTTCAGACTCAACGGTGCTGTGACC AGAGGCTTCGAGGACGACGTGGGCACCAAGATCTCCTTCTACGGCTTCACCGTGAACACG ATGAAGAACTCCCTCCTCGCCTACGCCCACCTGGGCTTCACCTCCGTGCCGCAGGGACAG GACCTGCGCTATATCTTCATCCCCTCGGACATCCGAGACTACGTGATGCTGAGATCGGCC ATTCTGGGCGTGCCGGTCCCCGAGGGCCATGATAAAGGGGACAGGCCGCAGACCTACTTT GGACCAGAAGCCTCCGCCAGCAAATTCAAGCTACTCCATCCAGACTTCGCCCGCATCTTC ACCAAGTCACCTAGGGAGGGGGGATTGATCAATACAAAATTTGGAGACCTATATATGCCT AGTACTGGGGCCCTCATGCTGCTGACAGCTCTGCATACCTGTGACCAGGTTAGTGCCTAT GGCTTCATCACAAGCAACTACTGGAAATTTTCTGACCACTATTTCGAGCGAATAAAGAAG CCGCTGATATTCTATGTGAACCACGACCTGTCCCTGGAAGCCACCTTGTGGAAGGACCTG CATGAGGCCGGCATCCTCTGGCTGTACCAGCGCTGACCCAGAGGCCCCCACCCCCCCAAG ATCTTTGCTCCTGCAGAGCTGTGGCCCCTGGCCCCTCAAGTGGCCAAAATTGCCTGCTTG TTTTTTTCAGCCTGAAGGGCTCCAACCATCTTCAACATCCTTCTCCCCTCCAGAGGACAG AGTGGATCTCTAACTGTCACTGAAACGTGTCTCGGGGACATCCCACCTTGTCCTTGGCCC AAGACTCCCCTCTGGTCTGAGAGAGACAGCCCAACCCGGTCAAGGAACAATGGACTGACT GCTCTGCCGCAAGACACCACTCAAGATGAGACTGTGGCCCTCGTGGGCATGAGGCACAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 171-341, gnl|bosTau2|chr19 (49111520-49111690) | |
| 171-341, gnl|canFam2|chr9 (7156831-7156628) | |
| 171-341, gnl|echTel1|scaffold_294935 (146452-146663) | |
| 171-341, gnl|Hg17|chr17 (72081042-72080872) | |
| 171-341, gnl|hg17|chr2 (84179221-84179436) | |
| 171-341, gnl|loxAfr1|scaffold_4125 (16296-16504) | |
| 171-341, gnl|mm7|chr11 (116794144-116794341) | |
| 171-341, gnl|Mm7|chr11 (116794312-116794142) | |
| 171-341, gnl|oryCun1|scaffold_142577 (3040-3239) | |
| 171-341, gnl|panTro1|chr12 (87055914-87056129) | |
| 171-341, gnl|rheMac2|chr13 (84565851-84566066) | |
| 171-341, gnl|rn3|chr10 (106817055-106817249) | |
| 446-585, gnl|bosTau2|chr19 (49114627-49114764) | |
| 446-585, gnl|canFam2|chr9 (7158807-7158672) | |
| 446-585, gnl|canFam2|chr9 (7158800-7158695) | |
| 446-585, gnl|danRer3|chrNA (132031757-132031631) | |
| 446-585, gnl|dasNov1|scaffold_41447 (35177-35320) | |
| 446-585, gnl|dasNov1|scaffold_53348 (9552-9646) | |
| 446-585, gnl|echTel1|scaffold_294935 (145407-145478) | |
| 446-585, gnl|hg17|chr17 (72078238-72078378) | |
| 446-585, gnl|Hg17|chr17 (72078377-72078241) | |
| 446-585, gnl|hg17|chr2 (84178995-84179091) | |
| 446-585, gnl|loxAfr1|scaffold_4125 (16055-16155) | |
| 446-585, gnl|loxAfr1|scaffold_4125 (16056-16161) | |
| 446-585, gnl|mm7|chr11 (116790900-116791024) | |
| 446-585, gnl|Mm7|chr11 (116791046-116790903) | |
| 446-585, gnl|mm7|chr6 (73674702-73674587) | |
| 446-585, gnl|monDom2|scaffold_18 (34969477-34969610) | |
| 446-585, gnl|oryCun1|scaffold_142577 (545-686) | |
| 446-585, gnl|oryCun1|scaffold_199336 (14470-14566) | |
| 446-585, gnl|panTro1|chr12 (87055691-87055787) | |
| 446-585, gnl|panTro1|chr19_random (53559525-53559385) | |
| 446-585, gnl|rheMac2|chr13 (84565638-84565734) | |
| 446-585, gnl|rheMac2|chr16 (71932618-71932758) | |
| 446-585, gnl|rn3|chr10 (106813228-106813352) | |
| 446-585, gnl|rn3|chr4 (107226592-107226490) | |
| 740-943, gnl|bosTau2|chr11 (37384447-37384243) | |
| 740-943, gnl|Hg17|chr2 (84178838-84178646) | |
| 740-943, gnl|Mm7|chr6 (73674859-73675074) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 171-341, gnl|bosTau2|chr19 (49111520-49111690) | |
| 171-341, gnl|canFam2|chr9 (7156831-7156628) | |
| 171-341, gnl|echTel1|scaffold_294935 (146452-146663) | |
| 171-341, gnl|Hg17|chr17 (72081042-72080872) | |
| 171-341, gnl|hg17|chr2 (84179221-84179436) | |
| 171-341, gnl|loxAfr1|scaffold_4125 (16296-16504) | |
| 171-341, gnl|mm7|chr11 (116794144-116794341) | |
| 171-341, gnl|Mm7|chr11 (116794312-116794142) | |
| 171-341, gnl|oryCun1|scaffold_142577 (3040-3239) | |
| 171-341, gnl|panTro1|chr12 (87055914-87056129) | |
| 171-341, gnl|rheMac2|chr13 (84565851-84566066) | |
| 171-341, gnl|rn3|chr10 (106817055-106817249) | |
| 446-585, gnl|bosTau2|chr19 (49114627-49114764) | |
| 446-585, gnl|canFam2|chr9 (7158807-7158672) | |
| 446-585, gnl|canFam2|chr9 (7158800-7158695) | |
| 446-585, gnl|danRer3|chrNA (132031757-132031631) | |
| 446-585, gnl|dasNov1|scaffold_41447 (35177-35320) | |
| 446-585, gnl|dasNov1|scaffold_53348 (9552-9646) | |
| 446-585, gnl|echTel1|scaffold_294935 (145407-145478) | |
| 446-585, gnl|hg17|chr17 (72078238-72078378) | |
| 446-585, gnl|Hg17|chr17 (72078377-72078241) | |
| 446-585, gnl|hg17|chr2 (84178995-84179091) | |
| 446-585, gnl|loxAfr1|scaffold_4125 (16055-16155) | |
| 446-585, gnl|loxAfr1|scaffold_4125 (16056-16161) | |
| 446-585, gnl|mm7|chr11 (116790900-116791024) | |
| 446-585, gnl|Mm7|chr11 (116791046-116790903) | |
| 446-585, gnl|mm7|chr6 (73674702-73674587) | |
| 446-585, gnl|monDom2|scaffold_18 (34969477-34969610) | |
| 446-585, gnl|oryCun1|scaffold_142577 (545-686) | |
| 446-585, gnl|oryCun1|scaffold_199336 (14470-14566) | |
| 446-585, gnl|panTro1|chr12 (87055691-87055787) | |
| 446-585, gnl|panTro1|chr19_random (53559525-53559385) | |
| 446-585, gnl|rheMac2|chr13 (84565638-84565734) | |
| 446-585, gnl|rheMac2|chr16 (71932618-71932758) | |
| 446-585, gnl|rn3|chr10 (106813228-106813352) | |
| 446-585, gnl|rn3|chr4 (107226592-107226490) | |
| 740-943, gnl|bosTau2|chr11 (37384447-37384243) | |
| 740-943, gnl|Hg17|chr2 (84178838-84178646) | |
| 740-943, gnl|Mm7|chr6 (73674859-73675074) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nms (0.213858) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| cag (0.151194) | |
| che (0.136314) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| cag (0.151194) | |
| che (0.136314) | |
| cly (0.120642) | |
| jca (0.11396) |