Non-Coding RNA Search

Ss1.1-LyN1-MLN01G120094.5

Sequence:


               
               TTGTTGTTGCCTTTGCGTTCCCGGTTGTCCTTTGCAGCTGGTGTCTGCCGTTATGCCTGA
GCCCGCCAAGTCCGCCCCGGCGCCCAAGAAGGGCTCGAAGAAAGCCGTCACCAAAGCCCA
GAAGAAGGACGGCAAGAAGCGGAAGCGCAGCCGCAAGGAGAGCTATTCCATCTACGTGTA
CAAGGTGCTGAAGCAGGTGCACCCGGACACGGGCATCTCGTCCAAGGCCATGGGCATCAT
GAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCGTCCCGCCTGGCTCA
TTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCT
GCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCGGTCACCAAGTACAC
CAGCTCCAAGTGAGTCCCTGCCGGGATAGTGGCGCTCGCCCGATCGCCGGGTCGCTTGAC
TCCAAAAGGCTCTTTTCAGAGCCACCCATCTTCTCAATGGAAGAAGCTGTCATCTTGTTT
TATCCGGGTCCTGTTTTCCTACTTTGCCTTTTGGTTTCTTCTAGTTAATACTGGGAGTTG
CCAGTAGTTAGAAACAAATTCTATTTCCATCCAGATATTTGACGGATAGGTATGCTTACC
TAGTTGGGTGAAAGAACCTAATGGAGGGTAGGCATGCTATATTTTGTCATAGAACTGCTC
TTGAAACTGGTTTGGACTTGATTGAACGCAAGTGCATGTGTCTACATCCAAGTTGTTAAG
CAAAATGCCTTTTTTTCTTTTTTTGTAGTATATAAACTTCTGCATGCAGCATAAAATTTC
AAAGGTGTAGCCGTCTGGTGTTAAGGAACAAAATGCTGGTGGCAGAATTTTTTTACCCAT
GTGCTCTATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTGTTGCCTTTGCGTTCCCGGTTGTCCTTTGCAGCTGGTGTCTGCCGTTATGCCTGA
GCCCGCCAAGTCCGCCCCGGCGCCCAAGAAGGGCTCGAAGAAAGCCGTCACCAAAGCCCA
GAAGAAGGACGGCAAGAAGCGGAAGCGCAGCCGCAAGGAGAGCTATTCCATCTACGTGTA
CAAGGTGCTGAAGCAGGTGCACCCGGACACGGGCATCTCGTCCAAGGCCATGGGCATCAT
GAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCGTCCCGCCTGGCTCA
TTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCT
GCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCGGTCACCAAGTACAC
CAGCTCCAAGTGAGTCCCTGCCGGGATAGTGGCGCTCGCCCGATCGCCGGGTCGCTTGAC
TCCAAAAGGCTCTTTTCAGAGCCACCCATCTTCTCAATGGAAGAAGCTGTCATCTTGTTT
TATCCGGGTCCTGTTTTCCTACTTTGCCTTTTGGTTTCTTCTAGTTAATACTGGGAGTTG
CCAGTAGTTAGAAACAAATTCTATTTCCATCCAGATATTTGACGGATAGGTATGCTTACC
TAGTTGGGTGAAAGAACCTAATGGAGGGTAGGCATGCTATATTTTGTCATAGAACTGCTC
TTGAAACTGGTTTGGACTTGATTGAACGCAAGTGCATGTGTCTACATCCAAGTTGTTAAG
CAAAATGCCTTTTTTTCTTTTTTTGTAGTATATAAACTTCTGCATGCAGCATAAAATTTC
AAAGGTGTAGCCGTCTGGTGTTAAGGAACAAAATGCTGGTGGCAGAATTTTTTTACCCAT
GTGCTCTATTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5QNX0_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5QNX0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               561-733, - strand, RNAz p=0.999912

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               561-733, - strand, RNAz p=0.999912

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               5-733, gnl|bosTau2|chr3 (17624802-17624091)
               

               
               5-733, gnl|Hg17|chr1 (146627633-146628259)
               


               
               53-431, gnl|bosTau2|chr10 (15825821-15825443)
               

               
               53-431, gnl|Hg17|chr6 (27883663-27883285)
               

               
               53-431, gnl|Mm7|chr13 (21120112-21120490)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-733, gnl|bosTau2|chr3 (17624802-17624091)
               

               
               5-733, gnl|Hg17|chr1 (146627633-146628259)
               


               
               53-431, gnl|bosTau2|chr10 (15825821-15825443)
               

               
               53-431, gnl|Hg17|chr6 (27883663-27883285)
               

               
               53-431, gnl|Mm7|chr13 (21120112-21120490)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               thg (0.126791)

	5-733, gnl\|bosTau2\|chr3 (17624802-17624091)
	5-733, gnl\|Hg17\|chr1 (146627633-146628259)

	53-431, gnl\|bosTau2\|chr10 (15825821-15825443)
	53-431, gnl\|Hg17\|chr6 (27883663-27883285)
	53-431, gnl\|Mm7\|chr13 (21120112-21120490)