Non-Coding RNA Search

Ss1.1-LyN1-MLN01H010064.5

Sequence:


               
               GCCACGTGGTTGGAAGTCCCTTCAAAGTGCGCGTTGGGGAGCCAGGACAAGCGGGGAACC
CTGCCCTGGTGTCTGCCTATGGCGCGGGGCTCGAGGGAGGCACCACAGGTATTCAATTTG
AATTTTTCATCAACACCACCCGAGCAGGGCCAGGGACATTATCTGCCACCATTGAAGGCC
CATCCAAGGTTAAAATGGATTGCCAGGAAACCCCAGAAGGGTACAAAGTCATGTACACCC
CCATGGCTCCTGGAAACTACCTGATTGGCGTCAAATACGGTGGGCCCAACCACATCGTTG
GCAGTCCTTTCAAGGCCAAGGTGACAGGCCAGCGTCTGGTCAGCCCCGGCTCGGCCAATG
AAACCTCATCCATCCTGGTGGAGTCAGTGACCAGGTCCTCAACGGAGACCTGCTATAGCG
CCATCCCCAAGGCATCCTCAGATGCCAGCAAGGTGACCTCCAAGGGAGCAGGACTCTCAA
AGGCCTTCGTGGGCCAGAAGAGCTCCTTCCTGGTGGATTGCAGCAAAGCCGGTTCCAACA
TGCTGTTGATCGGGGTCCATGGGCCCACCACCCCCTGCGAAGAGGTCTCCATGAAGCATG
TGGGCAACCAGCAATACAACGTCACATACGTCGTCAAGGAGAAGGGGGATTACGTTCTGG
CCGTGAAGTGGGGAGAGGAGCACATCCCTGGCAGCCCCTTCCATGTCACAGTGCCTTAAA
ACAGTTGTCGTCACATCCTGGGAGGAGTTGTAGTGGTTGCTTTTGTTGCTTGTTTGTAAC
TCGTCTTATACAAAGTCCACTGGCCTGTTTGTGGGTCTGAAACCCCATCCCCCAAAACAT
TGCCATTTTTTTCAAAGTACATTCAGAAAGAAGTTCTAGACTTGACTCTTTAGGGACATG
GTGGGGACTCAAAAAATGCACTCATTCAATAGGCCCAGCAAACCGGACCTCTTGTGGCAC
AGATCACCCCCTACAGACAGACCAAGAACACAGACAATGCTCACATTTTTAAGAAATGAA
ATGGGTTAGCCAGTTTACAAAACAAGACTGGGGCCTGAGGGTGGGGGGAGGGGGAGAGGG
AAAGAGGAGACCTCGTTTAGGTTGTCAAGAAAAGAAGATGACCTAACATCAGCTTTGCCT
CTTCCAGTGCCCATATCACGTGAGATGGACCCCATTGTTATAACACACCTCATTACCACC
CCGCCCCACCTCTCAAAGGGCAGCGTGACTGTGGTGACAAGCTGGCCAAAATGGCTTTTC
ACTGCCTCTCCCCTCATCCTGCTACTTACTTCCCCAGAGAGTCATTGTGTGTGACCATCT
GGGCAGCCACGTCTTTGCTTTTGTTTGTCAAGTCCATTTCAGTTGCCAGGTCTGAGGAAA
TTCTGCAGTGGTAAGCAGCCCCTGATTTGCCAAAGATCCACCCTTTTTTTAACCAACACT
AGCCCTTGTTCTTTACACGCTCCAGCTCAAGCTGTTCATCTATCTGATGAGTCCTACCAG
CACAACTAGAGAGACTGCAGGTGGGTCTGCGTATTAGCCGAGGCCTGTCACGCCACATAA
CATTAAGTCCACGTCCGCCCCAAGTCAGCCCCAGGGTCACTTTTTCTGAGAAGTAATTAT
AGAAAAGAACGAAACTCATATGACGTTTTAGCCTGAAAGTCAGGGAACTGCGGATCTGGA
GGGAAGGACGGCAGCTCACCAGTGGTCCTTTACCAGTTGCAGAAATAGTGAAAAGCTGTG
TCGCTGACCAGGGCTGTTGGGAAAGTGGTAGGCAGGTGCAAAATTGCAGAAATGGAGCAC
AAGGCATTTTGCACGCCTTCTTGCAGACCTACTTTGCAGACCAGCATTCAGGGGCTGCCT
GACTGCAGGGCCCAGATGTGCAGTGTGGTCTGGACAGGCAGCCTTTTCAGATTTGCCACT
TAGTCTTGAGGAGGTGGCCACTGTGGCAAGCACCCCCCTCCATGGATGGGGCGGAGCGAG
GTGGGTGACCCTCCCTGAGGTGTAGCAGCTGGGGGTGAGTGCTGGTGAAGCCCACCTGTT
GGAAACTGGAGCGGCCCAAAGCCTGAAGGGACCACAGGCCTCATAAACTGGGAGACAGAA
GGGAAACTGGGACCAAATGCCGACTGTAAATGTATCTTATAACTTATTAAATACAACATT
TGCTCCTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACGTGGTTGGAAGTCCCTTCAAAGTGCGCGTTGGGGAGCCAGGACAAGCGGGGAACC
CTGCCCTGGTGTCTGCCTATGGCGCGGGGCTCGAGGGAGGCACCACAGGTATTCAATTTG
AATTTTTCATCAACACCACCCGAGCAGGGCCAGGGACATTATCTGCCACCATTGAAGGCC
CATCCAAGGTTAAAATGGATTGCCAGGAAACCCCAGAAGGGTACAAAGTCATGTACACCC
CCATGGCTCCTGGAAACTACCTGATTGGCGTCAAATACGGTGGGCCCAACCACATCGTTG
GCAGTCCTTTCAAGGCCAAGGTGACAGGCCAGCGTCTGGTCAGCCCCGGCTCGGCCAATG
AAACCTCATCCATCCTGGTGGAGTCAGTGACCAGGTCCTCAACGGAGACCTGCTATAGCG
CCATCCCCAAGGCATCCTCAGATGCCAGCAAGGTGACCTCCAAGGGAGCAGGACTCTCAA
AGGCCTTCGTGGGCCAGAAGAGCTCCTTCCTGGTGGATTGCAGCAAAGCCGGTTCCAACA
TGCTGTTGATCGGGGTCCATGGGCCCACCACCCCCTGCGAAGAGGTCTCCATGAAGCATG
TGGGCAACCAGCAATACAACGTCACATACGTCGTCAAGGAGAAGGGGGATTACGTTCTGG
CCGTGAAGTGGGGAGAGGAGCACATCCCTGGCAGCCCCTTCCATGTCACAGTGCCTTAAA
ACAGTTGTCGTCACATCCTGGGAGGAGTTGTAGTGGTTGCTTTTGTTGCTTGTTTGTAAC
TCGTCTTATACAAAGTCCACTGGCCTGTTTGTGGGTCTGAAACCCCATCCCCCAAAACAT
TGCCATTTTTTTCAAAGTACATTCAGAAAGAAGTTCTAGACTTGACTCTTTAGGGACATG
GTGGGGACTCAAAAAATGCACTCATTCAATAGGCCCAGCAAACCGGACCTCTTGTGGCAC
AGATCACCCCCTACAGACAGACCAAGAACACAGACAATGCTCACATTTTTAAGAAATGAA
ATGGGTTAGCCAGTTTACAAAACAAGACTGGGGCCTGAGGGTGGGGGGAGGGGGAGAGGG
AAAGAGGAGACCTCGTTTAGGTTGTCAAGAAAAGAAGATGACCTAACATCAGCTTTGCCT
CTTCCAGTGCCCATATCACGTGAGATGGACCCCATTGTTATAACACACCTCATTACCACC
CCGCCCCACCTCTCAAAGGGCAGCGTGACTGTGGTGACAAGCTGGCCAAAATGGCTTTTC
ACTGCCTCTCCCCTCATCCTGCTACTTACTTCCCCAGAGAGTCATTGTGTGTGACCATCT
GGGCAGCCACGTCTTTGCTTTTGTTTGTCAAGTCCATTTCAGTTGCCAGGTCTGAGGAAA
TTCTGCAGTGGTAAGCAGCCCCTGATTTGCCAAAGATCCACCCTTTTTTTAACCAACACT
AGCCCTTGTTCTTTACACGCTCCAGCTCAAGCTGTTCATCTATCTGATGAGTCCTACCAG
CACAACTAGAGAGACTGCAGGTGGGTCTGCGTATTAGCCGAGGCCTGTCACGCCACATAA
CATTAAGTCCACGTCCGCCCCAAGTCAGCCCCAGGGTCACTTTTTCTGAGAAGTAATTAT
AGAAAAGAACGAAACTCATATGACGTTTTAGCCTGAAAGTCAGGGAACTGCGGATCTGGA
GGGAAGGACGGCAGCTCACCAGTGGTCCTTTACCAGTTGCAGAAATAGTGAAAAGCTGTG
TCGCTGACCAGGGCTGTTGGGAAAGTGGTAGGCAGGTGCAAAATTGCAGAAATGGAGCAC
AAGGCATTTTGCACGCCTTCTTGCAGACCTACTTTGCAGACCAGCATTCAGGGGCTGCCT
GACTGCAGGGCCCAGATGTGCAGTGTGGTCTGGACAGGCAGCCTTTTCAGATTTGCCACT
TAGTCTTGAGGAGGTGGCCACTGTGGCAAGCACCCCCCTCCATGGATGGGGCGGAGCGAG
GTGGGTGACCCTCCCTGAGGTGTAGCAGCTGGGGGTGAGTGCTGGTGAAGCCCACCTGTT
GGAAACTGGAGCGGCCCAAAGCCTGAAGGGACCACAGGCCTCATAAACTGGGAGACAGAA
GGGAAACTGGGACCAAATGCCGACTGTAAATGTATCTTATAACTTATTAAATACAACATT
TGCTCCTCAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               143-264, - strand, RNAz p=0.967777
               

               
               1791-1900, + strand, RNAz p=0.90878

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-264, - strand, RNAz p=0.967777
               

               
               1791-1900, + strand, RNAz p=0.90878

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX641085, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX641085, +

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               103-333, gnl|bosTau2|chrX (14342413-14342183)
               

               
               103-333, gnl|Hg17|chrX (153099088-153098858)
               

               
               103-333, gnl|Mm7|chrX (69611913-69611683)
               


               
               106-328, gnl|bosTau2|chr22 (31848898-31849120)
               

               
               106-328, gnl|Hg17|chr3 (58129204-58129426)
               

               
               106-328, gnl|Mm7|chr14 (5755865-5756087)
               


               
               531-1129, gnl|bosTau2|chr22 (31851303-31851891)
               

               
               531-1129, gnl|Hg17|chr3 (58131341-58131999)
               


               
               1163-2166, gnl|bosTau2|chr22 (31851908-31852916)
               

               
               1163-2166, gnl|Hg17|chr3 (58132021-58133013)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-333, gnl|bosTau2|chrX (14342413-14342183)
               

               
               103-333, gnl|Hg17|chrX (153099088-153098858)
               

               
               103-333, gnl|Mm7|chrX (69611913-69611683)
               


               
               106-328, gnl|bosTau2|chr22 (31848898-31849120)
               

               
               106-328, gnl|Hg17|chr3 (58129204-58129426)
               

               
               106-328, gnl|Mm7|chr14 (5755865-5756087)
               


               
               531-1129, gnl|bosTau2|chr22 (31851303-31851891)
               

               
               531-1129, gnl|Hg17|chr3 (58131341-58131999)
               


               
               1163-2166, gnl|bosTau2|chr22 (31851908-31852916)
               

               
               1163-2166, gnl|Hg17|chr3 (58132021-58133013)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	143-264, - strand, RNAz p=0.967777
	1791-1900, + strand, RNAz p=0.90878

	103-333, gnl\|bosTau2\|chrX (14342413-14342183)
	103-333, gnl\|Hg17\|chrX (153099088-153098858)
	103-333, gnl\|Mm7\|chrX (69611913-69611683)

	106-328, gnl\|bosTau2\|chr22 (31848898-31849120)
	106-328, gnl\|Hg17\|chr3 (58129204-58129426)
	106-328, gnl\|Mm7\|chr14 (5755865-5756087)

	531-1129, gnl\|bosTau2\|chr22 (31851303-31851891)
	531-1129, gnl\|Hg17\|chr3 (58131341-58131999)

	1163-2166, gnl\|bosTau2\|chr22 (31851908-31852916)
	1163-2166, gnl\|Hg17\|chr3 (58132021-58133013)

	ute (0.398353)
	fcc (0.39557)
	col (0.390016)
	ece (0.229305)
	mas (0.210305)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	cki (0.165235)
	csp (0.161186)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	cbr (0.127975)
	ese (0.126502)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)