Non-Coding RNA Search

Ss1.1-LyN1-MLN01H010102.5

Sequence:


               
               CGAACTCAGCCGGCGTCTCGCAATGGAGACGGTCACATCTTCAGATAGCTCCTCAGCTGT
GGAAAATGAGCATCCTCAAGACACCCCAGAATCCAACAATAGCGTGTACACTTCCTTCAT
GAAGTCTCATCGCTGCTATGACCTGATTCCCACAAGCTCAAAATTGGTTGTATTTGATAC
CTCCCTGCAGGTGAAGAAAGCTTTCTTTGCTTTGGTGACTAATGGTGTCCGAGCTGCCCC
TTTATGGGATAGTAAGAAGCAAAGTTTCGTGGGCATGCTGACCATCACTGATTTCATCAA
TATCCTGCACCGCTACTATAAATCAGCCTTGGTACAGATCTATGAGCTGGAAGAACACAA
GATAGAAACTTGGAGAGAGGTGTACCTACAGGACTCCTTTAAACCGCTTGTCTGCATTTC
TCCTAATGCCAGCTTGTTTGATGCTGTCTCTTCATTAATTCGAAACAAGATCCACAGGCT
GCCAGTTATTGACCCAGAGTCCGGGAACACCTTGTACATCCTCACCCACAAGCGCATCCT
CAAGTTCCTCAAGCTGTTTATCACTGAGTTCCCCAAGCCCGAGTTCATGTCTAAGTCTCT
GGAAGAGCTACAGATTGGCACCTATGCCAACATTGCTATGGTCCGCACTACCACCCCTGT
CTATGTGGCTCTGGGCATCTTTGTACAGCACCGAGTCTCAGCCCTGCCAGTGGTGGATGA
AAAAGGGCGTGTGGTGGACATCTACTCCAAGTTTGATGTTATCAACCTGGCAGCAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAACTCAGCCGGCGTCTCGCAATGGAGACGGTCACATCTTCAGATAGCTCCTCAGCTGT
GGAAAATGAGCATCCTCAAGACACCCCAGAATCCAACAATAGCGTGTACACTTCCTTCAT
GAAGTCTCATCGCTGCTATGACCTGATTCCCACAAGCTCAAAATTGGTTGTATTTGATAC
CTCCCTGCAGGTGAAGAAAGCTTTCTTTGCTTTGGTGACTAATGGTGTCCGAGCTGCCCC
TTTATGGGATAGTAAGAAGCAAAGTTTCGTGGGCATGCTGACCATCACTGATTTCATCAA
TATCCTGCACCGCTACTATAAATCAGCCTTGGTACAGATCTATGAGCTGGAAGAACACAA
GATAGAAACTTGGAGAGAGGTGTACCTACAGGACTCCTTTAAACCGCTTGTCTGCATTTC
TCCTAATGCCAGCTTGTTTGATGCTGTCTCTTCATTAATTCGAAACAAGATCCACAGGCT
GCCAGTTATTGACCCAGAGTCCGGGAACACCTTGTACATCCTCACCCACAAGCGCATCCT
CAAGTTCCTCAAGCTGTTTATCACTGAGTTCCCCAAGCCCGAGTTCATGTCTAAGTCTCT
GGAAGAGCTACAGATTGGCACCTATGCCAACATTGCTATGGTCCGCACTACCACCCCTGT
CTATGTGGCTCTGGGCATCTTTGTACAGCACCGAGTCTCAGCCCTGCCAGTGGTGGATGA
AAAAGGGCGTGTGGTGGACATCTACTCCAAGTTTGATGTTATCAACCTGGCAGCAGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48675947|ref|NP_001001642.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48675947|ref|NP_001001642.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               79-192, gnl|bosTau2|chr25 (20096189-20096301)
               

               
               79-192, gnl|Hg17|chr12 (47685904-47685791)
               

               
               79-192, gnl|Mm7|chr15 (98801245-98801132)
               


               
               224-763, gnl|bosTau2|chr25 (20096299-20096814)
               

               
               224-763, gnl|Hg17|chr12 (47685793-47683608)
               

               
               224-763, gnl|Mm7|chr15 (98801134-98799264)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-192, gnl|bosTau2|chr25 (20096189-20096301)
               

               
               79-192, gnl|Hg17|chr12 (47685904-47685791)
               

               
               79-192, gnl|Mm7|chr15 (98801245-98801132)
               


               
               224-763, gnl|bosTau2|chr25 (20096299-20096814)
               

               
               224-763, gnl|Hg17|chr12 (47685793-47683608)
               

               
               224-763, gnl|Mm7|chr15 (98801134-98799264)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               clu (0.358938)
               

               
               mas (0.210305)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               mas (0.210305)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	79-192, gnl\|bosTau2\|chr25 (20096189-20096301)
	79-192, gnl\|Hg17\|chr12 (47685904-47685791)
	79-192, gnl\|Mm7\|chr15 (98801245-98801132)

	224-763, gnl\|bosTau2\|chr25 (20096299-20096814)
	224-763, gnl\|Hg17\|chr12 (47685793-47683608)
	224-763, gnl\|Mm7\|chr15 (98801134-98799264)