Non-Coding RNA Search

Ss1.1-LyN1-MLN01H020056.5

Sequence:


               
               TTGGTCCTGATGTAGTCATGGCGGCCTTCCGGGACATGGAAGAAGTGAAGCCAGGGCTGC
TGAGCCTGCTGGGCGCCAACCGCGCTGAGGCGCAGCAACGGCGGCTGCTGGGGCGCCACG
AGCAGATGGTGGAGCGGCTGCTGGAAACGCAAGACGGCGCCGAGCAGCGGCTGCGAGAGA
TCCTCACCTTGGAGAAGGAGGTGGCCCAGAGCCTTCTTGATGCAAAGGAGCAGGCACAGC
AGGGCGGCACTCAGTTGCAGCAGCTTGAAGCCGAGCTTCAGAGGGCCAGCGAGGAGGACA
CCCAGCTGAAGGCCAGCCTCCTTCAGCTCACCAGAGAGTTGAAGGAACTCAAAGACATCG
AGGCTGATCTTGAAAGACAGGAAAGGGAGATCGACGAAGACACCACTGTCACCATCCCTT
CAGCCGTGTATGTAGCTCAACTTTATCGCCGAATAAGTAAAATTGAGTGGGATTATGAGT
GTGAGCCAGGGATGATCAAAGGCATCCATCACGGCCCCAGCATTGCCCAGCCCATCCACC
TGGACAGCACCCAGCTCTCCAAGAAATTCATCAGCGACTATCTCTGGAGCTTGGTGGACA
CAGAGTGGTAGCCAGGAGCCTCTCGACTGTGTCTTAACAGTCCTACACAGTAGAATCAGC
CGTGGTGGGCGGTCGGTGCCTTGGTGGTGAGATCAGCTTAAAATTAAATGTTTATACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTCCTGATGTAGTCATGGCGGCCTTCCGGGACATGGAAGAAGTGAAGCCAGGGCTGC
TGAGCCTGCTGGGCGCCAACCGCGCTGAGGCGCAGCAACGGCGGCTGCTGGGGCGCCACG
AGCAGATGGTGGAGCGGCTGCTGGAAACGCAAGACGGCGCCGAGCAGCGGCTGCGAGAGA
TCCTCACCTTGGAGAAGGAGGTGGCCCAGAGCCTTCTTGATGCAAAGGAGCAGGCACAGC
AGGGCGGCACTCAGTTGCAGCAGCTTGAAGCCGAGCTTCAGAGGGCCAGCGAGGAGGACA
CCCAGCTGAAGGCCAGCCTCCTTCAGCTCACCAGAGAGTTGAAGGAACTCAAAGACATCG
AGGCTGATCTTGAAAGACAGGAAAGGGAGATCGACGAAGACACCACTGTCACCATCCCTT
CAGCCGTGTATGTAGCTCAACTTTATCGCCGAATAAGTAAAATTGAGTGGGATTATGAGT
GTGAGCCAGGGATGATCAAAGGCATCCATCACGGCCCCAGCATTGCCCAGCCCATCCACC
TGGACAGCACCCAGCTCTCCAAGAAATTCATCAGCGACTATCTCTGGAGCTTGGTGGACA
CAGAGTGGTAGCCAGGAGCCTCTCGACTGTGTCTTAACAGTCCTACACAGTAGAATCAGC
CGTGGTGGGCGGTCGGTGCCTTGGTGGTGAGATCAGCTTAAAATTAAATGTTTATACACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8NBT2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8NBT2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               37-177, + strand, RNAz p=0.928781

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-177, + strand, RNAz p=0.928781

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_182513, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_182513, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-177, gnl|bosTau2|chr7 (11053340-11053164)
               

               
               1-177, gnl|canFam2|chr20 (53104014-53103642)
               

               
               1-177, gnl|echTel1|scaffold_320040 (1138-809)
               

               
               1-177, gnl|hg17|chr19 (11127280-11127685)
               

               
               1-177, gnl|Hg17|chr19 (11127469-11127293)
               

               
               1-177, gnl|mm7|chr9 (21641427-21641824)
               

               
               1-177, gnl|Mm7|chr9 (21641617-21641437)
               

               
               1-177, gnl|oryCun1|scaffold_159488 (433-819)
               

               
               1-177, gnl|panTro1|chr20 (11525777-11526182)
               

               
               1-177, gnl|rheMac2|chr19 (10976278-10976682)
               

               
               1-177, gnl|rn3|chr8 (20858949-20859340)
               


               
               323-433, gnl|bosTau2|chr7 (11049120-11049010)
               

               
               323-433, gnl|Hg17|chr19 (11119793-11119683)
               

               
               323-433, gnl|Mm7|chr9 (21638712-21638602)
               


               
               505-718, gnl|bosTau2|chr7 (11047475-11047261)
               

               
               505-718, gnl|Hg17|chr19 (11118965-11118780)
               

               
               505-718, gnl|Mm7|chr9 (21637613-21637421)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-177, gnl|bosTau2|chr7 (11053340-11053164)
               

               
               1-177, gnl|canFam2|chr20 (53104014-53103642)
               

               
               1-177, gnl|echTel1|scaffold_320040 (1138-809)
               

               
               1-177, gnl|hg17|chr19 (11127280-11127685)
               

               
               1-177, gnl|Hg17|chr19 (11127469-11127293)
               

               
               1-177, gnl|mm7|chr9 (21641427-21641824)
               

               
               1-177, gnl|Mm7|chr9 (21641617-21641437)
               

               
               1-177, gnl|oryCun1|scaffold_159488 (433-819)
               

               
               1-177, gnl|panTro1|chr20 (11525777-11526182)
               

               
               1-177, gnl|rheMac2|chr19 (10976278-10976682)
               

               
               1-177, gnl|rn3|chr8 (20858949-20859340)
               


               
               323-433, gnl|bosTau2|chr7 (11049120-11049010)
               

               
               323-433, gnl|Hg17|chr19 (11119793-11119683)
               

               
               323-433, gnl|Mm7|chr9 (21638712-21638602)
               


               
               505-718, gnl|bosTau2|chr7 (11047475-11047261)
               

               
               505-718, gnl|Hg17|chr19 (11118965-11118780)
               

               
               505-718, gnl|Mm7|chr9 (21637613-21637421)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               nlu (0.383362)
               

               
               csp (0.322373)
               

               
               nca (0.273748)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               csp (0.322373)
               

               
               nca (0.273748)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	1-177, gnl\|bosTau2\|chr7 (11053340-11053164)
	1-177, gnl\|canFam2\|chr20 (53104014-53103642)
	1-177, gnl\|echTel1\|scaffold_320040 (1138-809)
	1-177, gnl\|hg17\|chr19 (11127280-11127685)
	1-177, gnl\|Hg17\|chr19 (11127469-11127293)
	1-177, gnl\|mm7\|chr9 (21641427-21641824)
	1-177, gnl\|Mm7\|chr9 (21641617-21641437)
	1-177, gnl\|oryCun1\|scaffold_159488 (433-819)
	1-177, gnl\|panTro1\|chr20 (11525777-11526182)
	1-177, gnl\|rheMac2\|chr19 (10976278-10976682)
	1-177, gnl\|rn3\|chr8 (20858949-20859340)

	323-433, gnl\|bosTau2\|chr7 (11049120-11049010)
	323-433, gnl\|Hg17\|chr19 (11119793-11119683)
	323-433, gnl\|Mm7\|chr9 (21638712-21638602)

	505-718, gnl\|bosTau2\|chr7 (11047475-11047261)
	505-718, gnl\|Hg17\|chr19 (11118965-11118780)
	505-718, gnl\|Mm7\|chr9 (21637613-21637421)

	nlu (0.383362)
	csp (0.322373)
	nca (0.273748)
	ill (0.175593)
	eye (0.170503)
	eli (0.151814)
	lnt (0.142308)
	nmm (0.132802)
	thg (0.126791)
	ese (0.126502)
	eep (0.122564)
	med (0.116252)
	eje (0.0988338)