Ss1.1-LyN1-MLN01H020082.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAGGTTGCCGCCGCCGCTGCCGCCATCGTGCCAGCCCCTCGGGTCTCAACGAGGCCGGG TGACGCTCCAGAATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAA CATTACTACCAGTTATTTGATAACGACAGAACCCAACTAGGCGCAATTTATATTGACGCT TCATGCCTTACGTGGGAAGGACAGCAATTCCAGGGAAAAACTGCCATTGTGGAGAAATTA TCTAGCCTTCCGTTCCAGAAAATCCAGCATAGCATCACGGCACAAGACCATCAGCCCACA CCAGATAGCTGCATCATCAGCATGGTTGTGGGCCAGCTCAAGGCTGACGAAGACCCCATC ATGGGGTTCCACCAGATGTTCCTATTAAAGAACATCAATGATGCTTGGGTTTGCACCAAT GACATGTTCAGGCTTGCCCTGCACAACTTTGGCTGACCTCCTCCCAGCCAGGCACTCATG CTGTTTCCTTCTCCCTCCTCTTCCCAATACTATTCACACTCCTCCAGATGCTCCAAATAT CATACACAAATGAGCAGGGCCACGGTGGGAGTGGGCGCAGTGCGCTGCTGCTACCACCGA GGTATTGTGCATGATGTTTGGACACTAGGCTAGTTGCATCTGACAGGAGAAGTTTGTGTT GTACCAGCGCATGCCTTGGAAAGACTTAAGTAATGCAAAAGGTTGTCTTTTTTTTTTTTT TAAATCTACTGACAAGTTGCTCTAGTAACCCAAAGAAGTGAAGGAAAAAGCAGCTGCCTC ACCGCCCAGATATTGATTTGTTCAGATGTTTCAATGCCTCATGATACAATAAAACCACGA AAATTTTCTTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAGGTTGCCGCCGCCGCTGCCGCCATCGTGCCAGCCCCTCGGGTCTCAACGAGGCCGGG TGACGCTCCAGAATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAA CATTACTACCAGTTATTTGATAACGACAGAACCCAACTAGGCGCAATTTATATTGACGCT TCATGCCTTACGTGGGAAGGACAGCAATTCCAGGGAAAAACTGCCATTGTGGAGAAATTA TCTAGCCTTCCGTTCCAGAAAATCCAGCATAGCATCACGGCACAAGACCATCAGCCCACA CCAGATAGCTGCATCATCAGCATGGTTGTGGGCCAGCTCAAGGCTGACGAAGACCCCATC ATGGGGTTCCACCAGATGTTCCTATTAAAGAACATCAATGATGCTTGGGTTTGCACCAAT GACATGTTCAGGCTTGCCCTGCACAACTTTGGCTGACCTCCTCCCAGCCAGGCACTCATG CTGTTTCCTTCTCCCTCCTCTTCCCAATACTATTCACACTCCTCCAGATGCTCCAAATAT CATACACAAATGAGCAGGGCCACGGTGGGAGTGGGCGCAGTGCGCTGCTGCTACCACCGA GGTATTGTGCATGATGTTTGGACACTAGGCTAGTTGCATCTGACAGGAGAAGTTTGTGTT GTACCAGCGCATGCCTTGGAAAGACTTAAGTAATGCAAAAGGTTGTCTTTTTTTTTTTTT TAAATCTACTGACAAGTTGCTCTAGTAACCCAAAGAAGTGAAGGAAAAAGCAGCTGCCTC ACCGCCCAGATATTGATTTGTTCAGATGTTTCAATGCCTCATGATACAATAAAACCACGA AAATTTTCTTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 291-489, - strand, RNAz p=0.977103 | |
| 530-649, + strand, RNAz p=0.905101 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 291-489, - strand, RNAz p=0.977103 | |
| 530-649, + strand, RNAz p=0.905101 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 43-171, gnl|bosTau2|chr18 (14992929-14992801) | |
| 43-171, gnl|canFam2|chr7 (11505894-11506014) | |
| 43-171, gnl|canFam2|chr7 (11506032-11505894) | |
| 43-171, gnl|canFam2|chr7 (11505905-11506010) | |
| 43-171, gnl|danRer3|chr18 (21463834-21463951) | |
| 43-171, gnl|danRer3|chr18 (21463845-21463947) | |
| 43-171, gnl|dasNov1|scaffold_16234 (17332-17452) | |
| 43-171, gnl|dasNov1|scaffold_16234 (17470-17332) | |
| 43-171, gnl|dasNov1|scaffold_16234 (17343-17448) | |
| 43-171, gnl|echTel1|scaffold_288191 (8254-8134) | |
| 43-171, gnl|echTel1|scaffold_288191 (8116-8254) | |
| 43-171, gnl|echTel1|scaffold_288191 (8243-8138) | |
| 43-171, gnl|fr1|chrUn (252111574-252111488) | |
| 43-171, gnl|hg17|chr10 (13952763-13952899) | |
| 43-171, gnl|Hg17|chr16 (66456505-66456633) | |
| 43-171, gnl|hg17|chr17 (61427615-61427735) | |
| 43-171, gnl|hg17|chrX (70019690-70019795) | |
| 43-171, gnl|mm7|chr18 (10689919-10690036) | |
| 43-171, gnl|mm7|chr19 (53488367-53488232) | |
| 43-171, gnl|mm7|chr19 (53488243-53488347) | |
| 43-171, gnl|Mm7|chr8 (104474388-104474513) | |
| 43-171, gnl|monDom2|scaffold_15 (58815819-58815945) | |
| 43-171, gnl|monDom2|scaffold_23 (18381637-18381742) | |
| 43-171, gnl|monDom2|scaffold_36 (21078089-21077969) | |
| 43-171, gnl|oryCun1|scaffold_149409 (11882-12002) | |
| 43-171, gnl|oryCun1|scaffold_149409 (12020-11882) | |
| 43-171, gnl|oryCun1|scaffold_149409 (11893-11998) | |
| 43-171, gnl|panTro1|chr19 (64699003-64699123) | |
| 43-171, gnl|panTro1|chr8 (14400848-14400984) | |
| 43-171, gnl|panTro1|chrX (72203664-72203769) | |
| 43-171, gnl|rheMac2|chr1 (115738935-115739073) | |
| 43-171, gnl|rheMac2|chr16 (61411591-61411711) | |
| 43-171, gnl|rheMac2|chrX (69923785-69923890) | |
| 43-171, gnl|rn3|chr7 (13539939-13539825) | |
| 43-171, gnl|rn3|chr7 (13539807-13539939) | |
| 43-171, gnl|rn3|chr7 (13539928-13539829) | |
| 43-171, gnl|tetNig1|chrUn_random (18390430-18390539) | |
| 43-171, gnl|tetNig1|chrUn_random (18390430-18390545) | |
| 43-171, gnl|xenTro1|scaffold_145 (1408666-1408757) | |
| 172-864, gnl|bosTau2|chr2 (58050480-58051167) | |
| 172-864, gnl|Hg17|chr14 (35358894-35359570) | |
| 172-864, gnl|Mm7|chr19 (53488230-53487517) | |
| 632-855, gnl|bosTau2|chr15 (50289402-50289616) | |
| 632-855, gnl|Hg17|chr16 (66462490-66462715) | |
| 632-855, gnl|Mm7|chr8 (104477940-104478189) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-171, gnl|bosTau2|chr18 (14992929-14992801) | |
| 43-171, gnl|canFam2|chr7 (11505894-11506014) | |
| 43-171, gnl|canFam2|chr7 (11506032-11505894) | |
| 43-171, gnl|canFam2|chr7 (11505905-11506010) | |
| 43-171, gnl|danRer3|chr18 (21463834-21463951) | |
| 43-171, gnl|danRer3|chr18 (21463845-21463947) | |
| 43-171, gnl|dasNov1|scaffold_16234 (17332-17452) | |
| 43-171, gnl|dasNov1|scaffold_16234 (17470-17332) | |
| 43-171, gnl|dasNov1|scaffold_16234 (17343-17448) | |
| 43-171, gnl|echTel1|scaffold_288191 (8254-8134) | |
| 43-171, gnl|echTel1|scaffold_288191 (8116-8254) | |
| 43-171, gnl|echTel1|scaffold_288191 (8243-8138) | |
| 43-171, gnl|fr1|chrUn (252111574-252111488) | |
| 43-171, gnl|hg17|chr10 (13952763-13952899) | |
| 43-171, gnl|Hg17|chr16 (66456505-66456633) | |
| 43-171, gnl|hg17|chr17 (61427615-61427735) | |
| 43-171, gnl|hg17|chrX (70019690-70019795) | |
| 43-171, gnl|mm7|chr18 (10689919-10690036) | |
| 43-171, gnl|mm7|chr19 (53488367-53488232) | |
| 43-171, gnl|mm7|chr19 (53488243-53488347) | |
| 43-171, gnl|Mm7|chr8 (104474388-104474513) | |
| 43-171, gnl|monDom2|scaffold_15 (58815819-58815945) | |
| 43-171, gnl|monDom2|scaffold_23 (18381637-18381742) | |
| 43-171, gnl|monDom2|scaffold_36 (21078089-21077969) | |
| 43-171, gnl|oryCun1|scaffold_149409 (11882-12002) | |
| 43-171, gnl|oryCun1|scaffold_149409 (12020-11882) | |
| 43-171, gnl|oryCun1|scaffold_149409 (11893-11998) | |
| 43-171, gnl|panTro1|chr19 (64699003-64699123) | |
| 43-171, gnl|panTro1|chr8 (14400848-14400984) | |
| 43-171, gnl|panTro1|chrX (72203664-72203769) | |
| 43-171, gnl|rheMac2|chr1 (115738935-115739073) | |
| 43-171, gnl|rheMac2|chr16 (61411591-61411711) | |
| 43-171, gnl|rheMac2|chrX (69923785-69923890) | |
| 43-171, gnl|rn3|chr7 (13539939-13539825) | |
| 43-171, gnl|rn3|chr7 (13539807-13539939) | |
| 43-171, gnl|rn3|chr7 (13539928-13539829) | |
| 43-171, gnl|tetNig1|chrUn_random (18390430-18390539) | |
| 43-171, gnl|tetNig1|chrUn_random (18390430-18390545) | |
| 43-171, gnl|xenTro1|scaffold_145 (1408666-1408757) | |
| 172-864, gnl|bosTau2|chr2 (58050480-58051167) | |
| 172-864, gnl|Hg17|chr14 (35358894-35359570) | |
| 172-864, gnl|Mm7|chr19 (53488230-53487517) | |
| 632-855, gnl|bosTau2|chr15 (50289402-50289616) | |
| 632-855, gnl|Hg17|chr16 (66462490-66462715) | |
| 632-855, gnl|Mm7|chr8 (104477940-104478189) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| sme (0.610874) | |
| cag (0.453583) | |
| fli (0.405762) | |
| clu (0.358938) | |
| fty (0.351679) | |
| med (0.348756) | |
| ecc (0.345105) | |
| jca (0.34188) | |
| nco (0.323468) | |
| csp (0.322373) | |
| spl (0.286369) | |
| fce (0.271592) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cje (0.165235) | |
| cli (0.152812) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.610874) | |
| cag (0.453583) | |
| fli (0.405762) | |
| clu (0.358938) | |
| fty (0.351679) | |
| med (0.348756) | |
| ecc (0.345105) | |
| jca (0.34188) | |
| nco (0.323468) | |
| csp (0.322373) | |
| spl (0.286369) | |
| fce (0.271592) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cje (0.165235) | |
| cli (0.152812) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| nbm (0.0993246) |