Non-Coding RNA Search

Ss1.1-LyN1-MLN01H030097.5.5

Sequence:


               
               GAAGCTGGGGCGGCAAGATGGCGGCGCGAACGGCGTTTGGGGCGCTGGCCCGGCGTCTCT
GGCAGGGTTCAAGAAATTTTTCTGTAAGCAGTTCCAGGAGCAGTACGGCCAAAAATGGTG
GCTTTCTTCTCAGCACCACTATGAAGTGGGTACAGTTTTCAAACCTACACGTTGATGTTC
CCAAGGATATGACCAAGCCTGAGATAACCATTTCTGATGAACCAGACACATTATATAAGC
GCCTGTCAGTTTTAGTAAAAGGCCATGATAAGGCTGTTTTGGACAGTTATGAATACTTTG
CCGTGCTTGCTGCTAAAGAACTTGGCATCTCTATTAAGGTACATGAGCCTCCAAGGAAAA
TAGAGCGATTTACTCTTCTCAAATCAGTGCATATTTTCAAGAAGCACAGAGTTCAGTATG
AAATGAGAACCCTTTATAGATGTTTAGAGTTAGAACATCTCACTGGAAGTACAGCAGATG
TCTACTTGGAATATATTCAGCGAAACTTACCTGAAGGAGTTGCCATGGAAGTCACAAAGA
CAAAATTAGAACAATTACCAGAACACATCAGGAAGCCAATCTGGGAAACAATGCCAGAGG
AGAAAGAAGAGAGCAAGTCATAAAGTCTCAGCGCCACCGCTTGTTCCGGGGTGTGCAGTG
AGGGCGGGCCAGACCAGCGTGTCAAGGCAGGGGAGCCCTCAGCGAAGACAGTTTCGCGTC
CACCTAACTTCTCCTAAGGCCACATACCCTGACCAGTGGAAGCAGGGGTTAGAACTTGGG
TGACACATTGGACTATTTTATCTGTTCTTTTATACATGTCACTGTTTCAGTTCTGATGTT
TAACAAATGCCAGCAAACCTTTTGGACCACTCTGTACCAAGAGTCAAATTCATATTTGTT
ATTCTGCTGTTGTTCAATCATTAGTTTGTGGTTTATATTGTTTCATTCATCTGCAGGTGT
TTCAGATATTCCTCACACATTTTTATTCTTTCAAAGTACCTACAAGGAAGTTTTGATTAA
CTTAACCCTGAGCAGTTAAAGTTTTTGATACTTACCTTAGTTCAGACTGGCAAATGCTAG
TTTGGGGGTGGTGACCTCCAAATTCTCATGTAAACATTACATTCTTAAAAATGGGTGTAC
TTTGCAGGAGAGCAAGCTCATTTATGGCATGTCCTGAATTCTGCTGTGGCCCAAACCCTT
ACAGGGCTGTCTAGAAGGGTCACCAACATGGAATTTGAACATTCATGAGATTACTGCCTG
AATCATTTCATTCATCCTGTAATTTATTTATCCAGCAAGCTTTTCTTATGTTAACTCTGC
ACCCAGCATTCTAGTAAATACCAAAAATTGAATAGAAATAATGGCTTTTGAAAATTGTGC
AAGGCACAAATAAATACTTTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTGGGGCGGCAAGATGGCGGCGCGAACGGCGTTTGGGGCGCTGGCCCGGCGTCTCT
GGCAGGGTTCAAGAAATTTTTCTGTAAGCAGTTCCAGGAGCAGTACGGCCAAAAATGGTG
GCTTTCTTCTCAGCACCACTATGAAGTGGGTACAGTTTTCAAACCTACACGTTGATGTTC
CCAAGGATATGACCAAGCCTGAGATAACCATTTCTGATGAACCAGACACATTATATAAGC
GCCTGTCAGTTTTAGTAAAAGGCCATGATAAGGCTGTTTTGGACAGTTATGAATACTTTG
CCGTGCTTGCTGCTAAAGAACTTGGCATCTCTATTAAGGTACATGAGCCTCCAAGGAAAA
TAGAGCGATTTACTCTTCTCAAATCAGTGCATATTTTCAAGAAGCACAGAGTTCAGTATG
AAATGAGAACCCTTTATAGATGTTTAGAGTTAGAACATCTCACTGGAAGTACAGCAGATG
TCTACTTGGAATATATTCAGCGAAACTTACCTGAAGGAGTTGCCATGGAAGTCACAAAGA
CAAAATTAGAACAATTACCAGAACACATCAGGAAGCCAATCTGGGAAACAATGCCAGAGG
AGAAAGAAGAGAGCAAGTCATAAAGTCTCAGCGCCACCGCTTGTTCCGGGGTGTGCAGTG
AGGGCGGGCCAGACCAGCGTGTCAAGGCAGGGGAGCCCTCAGCGAAGACAGTTTCGCGTC
CACCTAACTTCTCCTAAGGCCACATACCCTGACCAGTGGAAGCAGGGGTTAGAACTTGGG
TGACACATTGGACTATTTTATCTGTTCTTTTATACATGTCACTGTTTCAGTTCTGATGTT
TAACAAATGCCAGCAAACCTTTTGGACCACTCTGTACCAAGAGTCAAATTCATATTTGTT
ATTCTGCTGTTGTTCAATCATTAGTTTGTGGTTTATATTGTTTCATTCATCTGCAGGTGT
TTCAGATATTCCTCACACATTTTTATTCTTTCAAAGTACCTACAAGGAAGTTTTGATTAA
CTTAACCCTGAGCAGTTAAAGTTTTTGATACTTACCTTAGTTCAGACTGGCAAATGCTAG
TTTGGGGGTGGTGACCTCCAAATTCTCATGTAAACATTACATTCTTAAAAATGGGTGTAC
TTTGCAGGAGAGCAAGCTCATTTATGGCATGTCCTGAATTCTGCTGTGGCCCAAACCCTT
ACAGGGCTGTCTAGAAGGGTCACCAACATGGAATTTGAACATTCATGAGATTACTGCCTG
AATCATTTCATTCATCCTGTAATTTATTTATCCAGCAAGCTTTTCTTATGTTAACTCTGC
ACCCAGCATTCTAGTAAATACCAAAAATTGAATAGAAATAATGGCTTTTGAAAATTGTGC
AAGGCACAAATAAATACTTTTCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|31652320|emb|CAD92529.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|31652320|emb|CAD92529.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               212-450, gnl|bosTau2|chr22 (16638271-16638044)
               

               
               212-450, gnl|Hg17|chr3 (4431633-4431399)
               

               
               212-450, gnl|Mm7|chr17 (63650840-63650602)
               


               
               538-1404, gnl|bosTau2|chr23 (13304874-13305742)
               

               
               538-1404, gnl|Hg17|chr6 (42284090-42283236)
               

               
               538-1404, gnl|Mm7|chr17 (45514740-45515715)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               212-450, gnl|bosTau2|chr22 (16638271-16638044)
               

               
               212-450, gnl|Hg17|chr3 (4431633-4431399)
               

               
               212-450, gnl|Mm7|chr17 (63650840-63650602)
               


               
               538-1404, gnl|bosTau2|chr23 (13304874-13305742)
               

               
               538-1404, gnl|Hg17|chr6 (42284090-42283236)
               

               
               538-1404, gnl|Mm7|chr17 (45514740-45515715)

Expressed library(ies): 47 entry(ies)

More info

Expressed library(ies): 47 entry(ies)

Help | Less info


               
               ski (0.880411)
               

               
               cty (0.5204)
               

               
               isp (0.451128)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               bla (0.373042)
               

               
               med (0.348756)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               fat (0.294855)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.880411)
               

               
               cty (0.5204)
               

               
               isp (0.451128)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               bla (0.373042)
               

               
               med (0.348756)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               fat (0.294855)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	212-450, gnl\|bosTau2\|chr22 (16638271-16638044)
	212-450, gnl\|Hg17\|chr3 (4431633-4431399)
	212-450, gnl\|Mm7\|chr17 (63650840-63650602)

	538-1404, gnl\|bosTau2\|chr23 (13304874-13305742)
	538-1404, gnl\|Hg17\|chr6 (42284090-42283236)
	538-1404, gnl\|Mm7\|chr17 (45514740-45515715)

	ski (0.880411)
	cty (0.5204)
	isp (0.451128)
	lin (0.436808)
	amn (0.417711)
	ova (0.387397)
	bla (0.373042)
	med (0.348756)
	cbl (0.344392)
	vin (0.332557)
	cki (0.330469)
	fat (0.294855)
	cga (0.279096)
	che (0.272628)
	ret (0.257467)
	sug (0.254582)
	thg (0.253582)
	tra (0.246184)
	cbe (0.239234)
	mgp (0.230681)
	cmu (0.186393)
	nep (0.183925)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	cut (0.169924)
	fhi (0.169578)
	cje (0.165235)
	mga (0.160205)
	tbr (0.154178)
	eli (0.151814)
	lun (0.150489)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	pla (0.133672)
	lyg (0.133103)
	eru (0.120048)
	pgl (0.118483)
	spc (0.113366)