Ss1.1-LyN1-MLN01H040024.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGCAAGCGACATGTCCCTGTGGGGAGCAGAGCCTCTGCACCCCAGAGTGAGGAGGACG CCGGGGTCAGAGGTGGCTGCAAGGCGGGCAGAGGAGGGCCCTGCGAAGGGGGGTGGGCTC GTGGCCCCGAAGCAATCAGGAAGGGAGGCCGGCTGGTGACAGGAGAGCCCGGAGGCCCGT GGGGCTGCGTGGACAGCCCGGAAGATCACAGCCATGCCTCACAGCTCCGACAGCAGCGAC TCCAGCTTCAGCCGCTCTCCACCCCCCAGCAAACAGGACTCATCCGATGATGTGAGAAAA GTTCAGAGAAGGGAGAAAAATCGCATTGCTGCCCAGAAAAGCCGGCAGAGGCAGACACAG AAAGCTGACACCCTCCATCTGGAGAGTGAAGACCTGGAGAAACAGAACGCGGCGCTGCGG AAGGAGATCAAGCAGCTCACAGAGGAGATGAAGTACTTCACATCGGTGCTGAGCAGCCAC GAGCCCCTGTGTTCCGTGCTGGCCGCCGGCGCGCCCTCGCCCCCCGAGGTGGTGTACAGC GCCCACGCCTTCCACCAGCCGCACGTCAGCTCCCCGCGCTTCCAACCCTGAGCTCCCCGA GAGGCAGGGCTGGCAGAGCCCCCACCCCAGCTGCTCCCAGGCCTCAGGAGGGGCACACAG ACTGTGGCCCGGCGGCGGCCCTTGTCCCTCAGCGTCCTCTCCCCGCCTGGAGACCCGAAG CCCGACGCCTTGGACCAGGATTGAACACAGGACGTGGCACCTGGAAGCATGTGTGGCCGC AGGGCAGTGTGTTGCCTGCTGGGAGGCCTGGGCTGGACCTTGGTGGGGTGGGAGGCCCCG TCCAGGGGGAAAGGAGGGCGGGGTTATTTTTCTCTATAAAAGTCTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGCAAGCGACATGTCCCTGTGGGGAGCAGAGCCTCTGCACCCCAGAGTGAGGAGGACG CCGGGGTCAGAGGTGGCTGCAAGGCGGGCAGAGGAGGGCCCTGCGAAGGGGGGTGGGCTC GTGGCCCCGAAGCAATCAGGAAGGGAGGCCGGCTGGTGACAGGAGAGCCCGGAGGCCCGT GGGGCTGCGTGGACAGCCCGGAAGATCACAGCCATGCCTCACAGCTCCGACAGCAGCGAC TCCAGCTTCAGCCGCTCTCCACCCCCCAGCAAACAGGACTCATCCGATGATGTGAGAAAA GTTCAGAGAAGGGAGAAAAATCGCATTGCTGCCCAGAAAAGCCGGCAGAGGCAGACACAG AAAGCTGACACCCTCCATCTGGAGAGTGAAGACCTGGAGAAACAGAACGCGGCGCTGCGG AAGGAGATCAAGCAGCTCACAGAGGAGATGAAGTACTTCACATCGGTGCTGAGCAGCCAC GAGCCCCTGTGTTCCGTGCTGGCCGCCGGCGCGCCCTCGCCCCCCGAGGTGGTGTACAGC GCCCACGCCTTCCACCAGCCGCACGTCAGCTCCCCGCGCTTCCAACCCTGAGCTCCCCGA GAGGCAGGGCTGGCAGAGCCCCCACCCCAGCTGCTCCCAGGCCTCAGGAGGGGCACACAG ACTGTGGCCCGGCGGCGGCCCTTGTCCCTCAGCGTCCTCTCCCCGCCTGGAGACCCGAAG CCCGACGCCTTGGACCAGGATTGAACACAGGACGTGGCACCTGGAAGCATGTGTGGCCGC AGGGCAGTGTGTTGCCTGCTGGGAGGCCTGGGCTGGACCTTGGTGGGGTGGGAGGCCCCG TCCAGGGGGAAAGGAGGGCGGGGTTATTTTTCTCTATAAAAGTCTGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 4-194, - strand, RNAz p=0.838193 | |
| 4-227, - strand, RNAz p=0.649179 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 4-194, - strand, RNAz p=0.838193 | |
| 4-227, - strand, RNAz p=0.649179 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 4-277, gnl|bosTau2|chr10 (57105762-57106038) | |
| 4-277, gnl|canFam2|chr8 (51575449-51575626) | |
| 4-277, gnl|dasNov1|scaffold_4293 (91392-91570) | |
| 4-277, gnl|echTel1|scaffold_277953 (49524-49705) | |
| 4-277, gnl|galGal2|chr5 (35130509-35130674) | |
| 4-277, gnl|hg17|chr14 (75058567-75058748) | |
| 4-277, gnl|Hg17|chr14 (75058568-75058842) | |
| 4-277, gnl|loxAfr1|scaffold_12562 (25641-25460) | |
| 4-277, gnl|mm7|chr12 (83688176-83688360) | |
| 4-277, gnl|Mm7|chr12 (83688177-83688454) | |
| 4-277, gnl|monDom2|scaffold_8 (58738227-58738045) | |
| 4-277, gnl|oryCun1|scaffold_215470 (142134-141992) | |
| 4-277, gnl|panTro1|chr15 (75092611-75092792) | |
| 4-277, gnl|rheMac2|chr7 (138647707-138647888) | |
| 4-277, gnl|rn3|chr6 (109796551-109796736) | |
| 381-744, gnl|bosTau2|chr10 (57126596-57126953) | |
| 381-744, gnl|canFam2|chr8 (51598153-51598392) | |
| 381-744, gnl|danRer3|chr20 (54024631-54024858) | |
| 381-744, gnl|dasNov1|scaffold_46886 (6833-7067) | |
| 381-744, gnl|echTel1|scaffold_277372 (9131-9344) | |
| 381-744, gnl|fr1|chrUn (63145789-63146017) | |
| 381-744, gnl|galGal2|chr5 (35135487-35135721) | |
| 381-744, gnl|hg17|chr14 (75082554-75082787) | |
| 381-744, gnl|Hg17|chr14 (75082557-75082888) | |
| 381-744, gnl|loxAfr1|scaffold_12562 (804-576) | |
| 381-744, gnl|mm7|chr12 (83710019-83710251) | |
| 381-744, gnl|Mm7|chr12 (83710022-83710352) | |
| 381-744, gnl|monDom2|scaffold_8 (58694547-58694315) | |
| 381-744, gnl|panTro1|chr15 (75116907-75117140) | |
| 381-744, gnl|rn3|chr6 (109820501-109820733) | |
| 381-744, gnl|tetNig1|chr14 (5397484-5397253) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-277, gnl|bosTau2|chr10 (57105762-57106038) | |
| 4-277, gnl|canFam2|chr8 (51575449-51575626) | |
| 4-277, gnl|dasNov1|scaffold_4293 (91392-91570) | |
| 4-277, gnl|echTel1|scaffold_277953 (49524-49705) | |
| 4-277, gnl|galGal2|chr5 (35130509-35130674) | |
| 4-277, gnl|hg17|chr14 (75058567-75058748) | |
| 4-277, gnl|Hg17|chr14 (75058568-75058842) | |
| 4-277, gnl|loxAfr1|scaffold_12562 (25641-25460) | |
| 4-277, gnl|mm7|chr12 (83688176-83688360) | |
| 4-277, gnl|Mm7|chr12 (83688177-83688454) | |
| 4-277, gnl|monDom2|scaffold_8 (58738227-58738045) | |
| 4-277, gnl|oryCun1|scaffold_215470 (142134-141992) | |
| 4-277, gnl|panTro1|chr15 (75092611-75092792) | |
| 4-277, gnl|rheMac2|chr7 (138647707-138647888) | |
| 4-277, gnl|rn3|chr6 (109796551-109796736) | |
| 381-744, gnl|bosTau2|chr10 (57126596-57126953) | |
| 381-744, gnl|canFam2|chr8 (51598153-51598392) | |
| 381-744, gnl|danRer3|chr20 (54024631-54024858) | |
| 381-744, gnl|dasNov1|scaffold_46886 (6833-7067) | |
| 381-744, gnl|echTel1|scaffold_277372 (9131-9344) | |
| 381-744, gnl|fr1|chrUn (63145789-63146017) | |
| 381-744, gnl|galGal2|chr5 (35135487-35135721) | |
| 381-744, gnl|hg17|chr14 (75082554-75082787) | |
| 381-744, gnl|Hg17|chr14 (75082557-75082888) | |
| 381-744, gnl|loxAfr1|scaffold_12562 (804-576) | |
| 381-744, gnl|mm7|chr12 (83710019-83710251) | |
| 381-744, gnl|Mm7|chr12 (83710022-83710352) | |
| 381-744, gnl|monDom2|scaffold_8 (58694547-58694315) | |
| 381-744, gnl|panTro1|chr15 (75116907-75117140) | |
| 381-744, gnl|rn3|chr6 (109820501-109820733) | |
| 381-744, gnl|tetNig1|chr14 (5397484-5397253) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |