Non-Coding RNA Search

Ss1.1-LyN1-MLN01H040034.5

Sequence:


               
               TGGAGACTTCCGACCTCCGCCTGAATTTTCCAGCTCCGTTTTTGAACAGCGACTGAGATT
CTAGGAAAACTGGCTGCTAACTGGCCTCAGCCAGGCGAAACTGAGTACATCCCTCCTCCT
TTTTTAAGTTATTGGATGGAAGACCAGCCTAATTTATAACGTGAGACTGTGGATGGAAGG
AGAGGAGATTGAGGATTTTTCTTGCATCTTCGTTCCCTGGGCTCTGGATCCCTCGATGAC
GCACAGGTGTCCCAGCTGCATCCTGTGGGCTCAAGTCCCAGGAGCATTGGAGCTTGGTGG
ATTTAGTGCTGATCAGAGGAGCAGCCAGGCGAGGCCCCTGGATCAGATGCATGACGCGTC
ACACCCAGGGGCTCCCCCAAGTCCCACAGGTGTTACCTGGGTCGCAAGGTTTTCCAGAAA
GGAGACAGCTCCCCACCTGTGCATTTCCGCCATCCCTTTCTCTCCGTTCTTTCTAGCCTC
TCAAGCAATAGTTCTAGCCTGCCGGGGGTCTTTGAGAGCCCCTGGTAAACCATCCATGTG
TGAGCGCCAGGCAGTCTTCGGCAGAAGCTTGCCCGCCTGTGAGTCCCTGACCTGTGCTCT
CTTTGCTTGGCGTTTGCGGTGACAGGGAGTGACCCAGAGGCCACCACTGCTTTACGTGCA
GGAGTTACAGACACTGGTTTCTTGGGAAATGGAGAGAAGCGCACTTTGCACAGACGTCGC
CACTTGGTATTGAGTACACTGGACCCTGACCCCCGGCTCTGGGGCCCGCGTCCTTCCTCG
CGGCATGCAGAGGCCCCAGCGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGACTTCCGACCTCCGCCTGAATTTTCCAGCTCCGTTTTTGAACAGCGACTGAGATT
CTAGGAAAACTGGCTGCTAACTGGCCTCAGCCAGGCGAAACTGAGTACATCCCTCCTCCT
TTTTTAAGTTATTGGATGGAAGACCAGCCTAATTTATAACGTGAGACTGTGGATGGAAGG
AGAGGAGATTGAGGATTTTTCTTGCATCTTCGTTCCCTGGGCTCTGGATCCCTCGATGAC
GCACAGGTGTCCCAGCTGCATCCTGTGGGCTCAAGTCCCAGGAGCATTGGAGCTTGGTGG
ATTTAGTGCTGATCAGAGGAGCAGCCAGGCGAGGCCCCTGGATCAGATGCATGACGCGTC
ACACCCAGGGGCTCCCCCAAGTCCCACAGGTGTTACCTGGGTCGCAAGGTTTTCCAGAAA
GGAGACAGCTCCCCACCTGTGCATTTCCGCCATCCCTTTCTCTCCGTTCTTTCTAGCCTC
TCAAGCAATAGTTCTAGCCTGCCGGGGGTCTTTGAGAGCCCCTGGTAAACCATCCATGTG
TGAGCGCCAGGCAGTCTTCGGCAGAAGCTTGCCCGCCTGTGAGTCCCTGACCTGTGCTCT
CTTTGCTTGGCGTTTGCGGTGACAGGGAGTGACCCAGAGGCCACCACTGCTTTACGTGCA
GGAGTTACAGACACTGGTTTCTTGGGAAATGGAGAGAAGCGCACTTTGCACAGACGTCGC
CACTTGGTATTGAGTACACTGGACCCTGACCCCCGGCTCTGGGGCCCGCGTCCTTCCTCG
CGGCATGCAGAGGCCCCAGCGGCT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-188, gnl|bosTau2|chr13 (24654959-24655146)
               

               
               1-188, gnl|canFam2|chr24 (6593594-6593182)
               

               
               1-188, gnl|dasNov1|scaffold_255750 (688-292)
               

               
               1-188, gnl|echTel1|scaffold_282445 (8839-8428)
               

               
               1-188, gnl|galGal2|chr3 (3972586-3972955)
               

               
               1-188, gnl|hg17|chr20 (19649823-19650221)
               

               
               1-188, gnl|Hg17|chr20 (19650006-19650195)
               

               
               1-188, gnl|mm7|chr2 (145381261-145381672)
               

               
               1-188, gnl|Mm7|chr2 (145381468-145381651)
               

               
               1-188, gnl|monDom2|scaffold_1 (54827451-54827863)
               

               
               1-188, gnl|panTro1|chr21 (19562524-19562922)
               

               
               1-188, gnl|rheMac2|chr10 (53024258-53024653)
               

               
               1-188, gnl|rn3|chr3 (134153181-134153592)
               

               
               1-188, gnl|xenTro1|scaffold_582 (792018-792401)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-188, gnl|bosTau2|chr13 (24654959-24655146)
               

               
               1-188, gnl|canFam2|chr24 (6593594-6593182)
               

               
               1-188, gnl|dasNov1|scaffold_255750 (688-292)
               

               
               1-188, gnl|echTel1|scaffold_282445 (8839-8428)
               

               
               1-188, gnl|galGal2|chr3 (3972586-3972955)
               

               
               1-188, gnl|hg17|chr20 (19649823-19650221)
               

               
               1-188, gnl|Hg17|chr20 (19650006-19650195)
               

               
               1-188, gnl|mm7|chr2 (145381261-145381672)
               

               
               1-188, gnl|Mm7|chr2 (145381468-145381651)
               

               
               1-188, gnl|monDom2|scaffold_1 (54827451-54827863)
               

               
               1-188, gnl|panTro1|chr21 (19562524-19562922)
               

               
               1-188, gnl|rheMac2|chr10 (53024258-53024653)
               

               
               1-188, gnl|rn3|chr3 (134153181-134153592)
               

               
               1-188, gnl|xenTro1|scaffold_582 (792018-792401)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	1-188, gnl\|bosTau2\|chr13 (24654959-24655146)
	1-188, gnl\|canFam2\|chr24 (6593594-6593182)
	1-188, gnl\|dasNov1\|scaffold_255750 (688-292)
	1-188, gnl\|echTel1\|scaffold_282445 (8839-8428)
	1-188, gnl\|galGal2\|chr3 (3972586-3972955)
	1-188, gnl\|hg17\|chr20 (19649823-19650221)
	1-188, gnl\|Hg17\|chr20 (19650006-19650195)
	1-188, gnl\|mm7\|chr2 (145381261-145381672)
	1-188, gnl\|Mm7\|chr2 (145381468-145381651)
	1-188, gnl\|monDom2\|scaffold_1 (54827451-54827863)
	1-188, gnl\|panTro1\|chr21 (19562524-19562922)
	1-188, gnl\|rheMac2\|chr10 (53024258-53024653)
	1-188, gnl\|rn3\|chr3 (134153181-134153592)
	1-188, gnl\|xenTro1\|scaffold_582 (792018-792401)