Ss1.1-LyN1-MLN01H040087.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTACAACCCAGTATCAAGGCACCTGCCGCTGCGCAGGGACCATTTACCTATGAAACTGG AACGACAAGGTCATCATTTCCGACATCGATGGAACAATAACCAAGTCTGATGCCTTGGGA CAGATTCTCCCACAGCTGGGTAAAGACTGGACTCATCAGGGTATAGCCAAGCTCTACCAC TCCATCAATGAGAATGGCTACAAGTTCCTGTACTGCTCCGCCCGTGCCATCGGCATGGCC GACATGACCCGTGGCTACCTGCACTGGGTCAACGACAAGGGCACGATCCTGCCCCGGGGC CCCCTGATGCTGTCCCCCAGCAGCCTGTTCTCGGCCTTCCACAGGGAAGTAATAGAAAAG AAACCAGAGAAGTTCAAAATCGAGTGTCTAAATGACATCAAGAATCTGTTTGCCCCATCC AAGCAGCCCTTCTATGCTGCCTTTGGAAACCGTCCAAATGATGTCTATGCGTACATGCAA GTTGGAGTTCCGGACTGCAGAATATTCACCGTGAACCCCAAGGGCGAACTGATACAAGAG AGGACCAAAGGAAACAAGTCATCGTATCACAGACTGAGCGAGCTCGTGGAACACGTGTTC CCACTTCTCAGTAAGGAACAGAATTCTGCCTTCCTGTGCCCGGAGTTCAGCTCCTTCTGC TACTGGCGAGACCCAATCCCCGAGGTGGACCTGGACGACTTGGCCTGAGGCGGCACCTCC AGCGGGGGGACCCGCCATCGCTCACCTCGCAGCAGGGGAAGGTGACCGGCCCTTCTGCTG GACAGAGGACACGGGGCTACCCTCCCAGCCACAGGTGTGGGATGAGACGTGCTGACATCC AGGTGCCAGCAGGGACGGGGAGGGCCGCTGGAGCTGGAACTGCCCTCCCCGTCACCCTCT CGGGCTCGGTGGCACCACCAACACCCAGGCAGGGGGAGCGACGCCTGGGCTCTGTTGCTG GCTGGTCCTCTCACACACACTGTGACCAGTTGAGGTGTGTGCTGGGTGCTCCTTTAATTG CATAATTTAAATGGAAGAGGAAAGACACTAAGAGTGGACCAAAACATTGCACAAAGTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTACAACCCAGTATCAAGGCACCTGCCGCTGCGCAGGGACCATTTACCTATGAAACTGG AACGACAAGGTCATCATTTCCGACATCGATGGAACAATAACCAAGTCTGATGCCTTGGGA CAGATTCTCCCACAGCTGGGTAAAGACTGGACTCATCAGGGTATAGCCAAGCTCTACCAC TCCATCAATGAGAATGGCTACAAGTTCCTGTACTGCTCCGCCCGTGCCATCGGCATGGCC GACATGACCCGTGGCTACCTGCACTGGGTCAACGACAAGGGCACGATCCTGCCCCGGGGC CCCCTGATGCTGTCCCCCAGCAGCCTGTTCTCGGCCTTCCACAGGGAAGTAATAGAAAAG AAACCAGAGAAGTTCAAAATCGAGTGTCTAAATGACATCAAGAATCTGTTTGCCCCATCC AAGCAGCCCTTCTATGCTGCCTTTGGAAACCGTCCAAATGATGTCTATGCGTACATGCAA GTTGGAGTTCCGGACTGCAGAATATTCACCGTGAACCCCAAGGGCGAACTGATACAAGAG AGGACCAAAGGAAACAAGTCATCGTATCACAGACTGAGCGAGCTCGTGGAACACGTGTTC CCACTTCTCAGTAAGGAACAGAATTCTGCCTTCCTGTGCCCGGAGTTCAGCTCCTTCTGC TACTGGCGAGACCCAATCCCCGAGGTGGACCTGGACGACTTGGCCTGAGGCGGCACCTCC AGCGGGGGGACCCGCCATCGCTCACCTCGCAGCAGGGGAAGGTGACCGGCCCTTCTGCTG GACAGAGGACACGGGGCTACCCTCCCAGCCACAGGTGTGGGATGAGACGTGCTGACATCC AGGTGCCAGCAGGGACGGGGAGGGCCGCTGGAGCTGGAACTGCCCTCCCCGTCACCCTCT CGGGCTCGGTGGCACCACCAACACCCAGGCAGGGGGAGCGACGCCTGGGCTCTGTTGCTG GCTGGTCCTCTCACACACACTGTGACCAGTTGAGGTGTGTGCTGGGTGCTCCTTTAATTG CATAATTTAAATGGAAGAGGAAAGACACTAAGAGTGGACCAAAACATTGCACAAAGTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-106, - strand, RNAz p=0.507105 | |
| 564-682, - strand, RNAz p=0.610543 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-106, - strand, RNAz p=0.507105 | |
| 564-682, - strand, RNAz p=0.610543 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-106, gnl|bosTau2|chr24 (27019532-27019637) | |
| 1-106, gnl|canFam2|chr7 (72629567-72629767) | |
| 1-106, gnl|danRer3|chr2 (22914123-22913955) | |
| 1-106, gnl|dasNov1|scaffold_47985 (5880-6029) | |
| 1-106, gnl|echTel1|scaffold_316682 (90250-90433) | |
| 1-106, gnl|fr1|chrUn (3068284-3068439) | |
| 1-106, gnl|galGal2|chr2 (100750916-100751091) | |
| 1-106, gnl|hg17|chr18 (2914368-2914568) | |
| 1-106, gnl|Hg17|chr18 (2914499-2914394) | |
| 1-106, gnl|loxAfr1|scaffold_11428 (16112-16313) | |
| 1-106, gnl|mm7|chr17 (69522824-69522631) | |
| 1-106, gnl|Mm7|chr17 (69522696-69522801) | |
| 1-106, gnl|monDom2|scaffold_21 (31563645-31563466) | |
| 1-106, gnl|oryCun1|scaffold_196352 (8606-8799) | |
| 1-106, gnl|panTro1|chr17 (9848393-9848193) | |
| 1-106, gnl|rheMac2|chr18 (11238903-11238703) | |
| 1-106, gnl|rn3|chr9 (110658802-110658602) | |
| 1-106, gnl|tetNig1|chr6 (4524110-4524265) | |
| 1-106, gnl|xenTro1|scaffold_460 (944279-944474) | |
| 193-345, gnl|bosTau2|chr11 (65569774-65569926) | |
| 193-345, gnl|Hg17|chr2 (11905813-11905965) | |
| 193-345, gnl|Mm7|chr12 (16599046-16598894) | |
| 564-1080, gnl|bosTau2|chr24 (27022802-27023325) | |
| 564-1080, gnl|canFam2|chr7 (72625688-72626230) | |
| 564-1080, gnl|dasNov1|scaffold_47985 (4720-5332) | |
| 564-1080, gnl|echTel1|scaffold_316682 (84367-84756) | |
| 564-1080, gnl|hg17|chr18 (2909807-2910289) | |
| 564-1080, gnl|Hg17|chr18 (2910435-2909934) | |
| 564-1080, gnl|loxAfr1|scaffold_11428 (10800-11275) | |
| 564-1080, gnl|mm7|chr17 (69526780-69526338) | |
| 564-1080, gnl|Mm7|chr17 (69526190-69526678) | |
| 564-1080, gnl|monDom2|scaffold_21 (31573709-31573140) | |
| 564-1080, gnl|oryCun1|scaffold_196352 (2715-3154) | |
| 564-1080, gnl|panTro1|chr17 (9852941-9852458) | |
| 564-1080, gnl|rheMac2|chr18 (11243400-11242930) | |
| 564-1080, gnl|rn3|chr9 (110662608-110662144) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-106, gnl|bosTau2|chr24 (27019532-27019637) | |
| 1-106, gnl|canFam2|chr7 (72629567-72629767) | |
| 1-106, gnl|danRer3|chr2 (22914123-22913955) | |
| 1-106, gnl|dasNov1|scaffold_47985 (5880-6029) | |
| 1-106, gnl|echTel1|scaffold_316682 (90250-90433) | |
| 1-106, gnl|fr1|chrUn (3068284-3068439) | |
| 1-106, gnl|galGal2|chr2 (100750916-100751091) | |
| 1-106, gnl|hg17|chr18 (2914368-2914568) | |
| 1-106, gnl|Hg17|chr18 (2914499-2914394) | |
| 1-106, gnl|loxAfr1|scaffold_11428 (16112-16313) | |
| 1-106, gnl|mm7|chr17 (69522824-69522631) | |
| 1-106, gnl|Mm7|chr17 (69522696-69522801) | |
| 1-106, gnl|monDom2|scaffold_21 (31563645-31563466) | |
| 1-106, gnl|oryCun1|scaffold_196352 (8606-8799) | |
| 1-106, gnl|panTro1|chr17 (9848393-9848193) | |
| 1-106, gnl|rheMac2|chr18 (11238903-11238703) | |
| 1-106, gnl|rn3|chr9 (110658802-110658602) | |
| 1-106, gnl|tetNig1|chr6 (4524110-4524265) | |
| 1-106, gnl|xenTro1|scaffold_460 (944279-944474) | |
| 193-345, gnl|bosTau2|chr11 (65569774-65569926) | |
| 193-345, gnl|Hg17|chr2 (11905813-11905965) | |
| 193-345, gnl|Mm7|chr12 (16599046-16598894) | |
| 564-1080, gnl|bosTau2|chr24 (27022802-27023325) | |
| 564-1080, gnl|canFam2|chr7 (72625688-72626230) | |
| 564-1080, gnl|dasNov1|scaffold_47985 (4720-5332) | |
| 564-1080, gnl|echTel1|scaffold_316682 (84367-84756) | |
| 564-1080, gnl|hg17|chr18 (2909807-2910289) | |
| 564-1080, gnl|Hg17|chr18 (2910435-2909934) | |
| 564-1080, gnl|loxAfr1|scaffold_11428 (10800-11275) | |
| 564-1080, gnl|mm7|chr17 (69526780-69526338) | |
| 564-1080, gnl|Mm7|chr17 (69526190-69526678) | |
| 564-1080, gnl|monDom2|scaffold_21 (31573709-31573140) | |
| 564-1080, gnl|oryCun1|scaffold_196352 (2715-3154) | |
| 564-1080, gnl|panTro1|chr17 (9852941-9852458) | |
| 564-1080, gnl|rheMac2|chr18 (11243400-11242930) | |
| 564-1080, gnl|rn3|chr9 (110662608-110662144) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| duo (0.172801) |