Non-Coding RNA Search

Ss1.1-LyN1-MLN01H050022.5

Sequence:


               
               GAGGAAGAAGCAGAGCGCCCCGAGCCGGACGGGCTTCTGAATCTGGCAGGAGACAACTTG
GAGGAACAGACGCAGAGGGGTTGAGAGGAGATTAAGTTGGACTCCTACCTGATCCCCCAC
TGTGGTAGGATGAATGTGGGGGTGGCACACAGCGAAGTAAACCCCAACACTCGAGTGATG
AATAGTCGGGGCATCTGGCTGGCCTACATCATCTTGGTAGGACTGCTGCATGTGGTTCTA
CTCAGCATCCCCTTCTTCAGCATTCCTGTTGTCTGGACCCTGACCAACGTCATCCATAAT
TTGGCTATGTATGTTTTCCTACATACGGTGAAAGGGACACCCTTTGAGACTCCCGACCAA
GGAAAGGCTCGGCTACTTACACACTGGGAACAGATGGACTACGGGCTCCAATTTACCTCT
TCCCGCAAATTCCTCAGCATCTCTCCTATTGTACTCTACCTCCTGGCCAGCTTCTACACC
AAGTATGATGCTGCTCACTTCCTCATCAATACAGTCTCATTGCTCAGCGTACTGCTGCCT
AAGTTGCCCCAATTCCATGGGGTTCGCCTCTTTGGCATCAACAAATACTGAGGGATGGTC
TGGGAACATTGGAACAAAGGGTTGTAACTTCTCTCCTTTCTCCAAACTGTCTTTGGTATC
CTGAAACCCTGAGAACTATACAACCTTTCCCATACTCCTACTGGAAACTCTAACTTTTCC
CAAGTTTTTGTTGGAAAATGGGGTTCTCTGAGCCTAGCCCTGCTAGGAGCAGGATTTCTT
TGAATCAGGAAAGACAGGTGAGGTAAGGGCCAAATCACTCTCCTGCACAGCAGGAAACCA
TGTTTGGGCAGCTTTTTCGTTGTGTTTCCGTATCATCCACTCCCACTACCTTCCAGCTCT
GTTTTGCTATGTATTTCTTCTAATAAAGGTAATTTTTTCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAAGAAGCAGAGCGCCCCGAGCCGGACGGGCTTCTGAATCTGGCAGGAGACAACTTG
GAGGAACAGACGCAGAGGGGTTGAGAGGAGATTAAGTTGGACTCCTACCTGATCCCCCAC
TGTGGTAGGATGAATGTGGGGGTGGCACACAGCGAAGTAAACCCCAACACTCGAGTGATG
AATAGTCGGGGCATCTGGCTGGCCTACATCATCTTGGTAGGACTGCTGCATGTGGTTCTA
CTCAGCATCCCCTTCTTCAGCATTCCTGTTGTCTGGACCCTGACCAACGTCATCCATAAT
TTGGCTATGTATGTTTTCCTACATACGGTGAAAGGGACACCCTTTGAGACTCCCGACCAA
GGAAAGGCTCGGCTACTTACACACTGGGAACAGATGGACTACGGGCTCCAATTTACCTCT
TCCCGCAAATTCCTCAGCATCTCTCCTATTGTACTCTACCTCCTGGCCAGCTTCTACACC
AAGTATGATGCTGCTCACTTCCTCATCAATACAGTCTCATTGCTCAGCGTACTGCTGCCT
AAGTTGCCCCAATTCCATGGGGTTCGCCTCTTTGGCATCAACAAATACTGAGGGATGGTC
TGGGAACATTGGAACAAAGGGTTGTAACTTCTCTCCTTTCTCCAAACTGTCTTTGGTATC
CTGAAACCCTGAGAACTATACAACCTTTCCCATACTCCTACTGGAAACTCTAACTTTTCC
CAAGTTTTTGTTGGAAAATGGGGTTCTCTGAGCCTAGCCCTGCTAGGAGCAGGATTTCTT
TGAATCAGGAAAGACAGGTGAGGTAAGGGCCAAATCACTCTCCTGCACAGCAGGAAACCA
TGTTTGGGCAGCTTTTTCGTTGTGTTTCCGTATCATCCACTCCCACTACCTTCCAGCTCT
GTTTTGCTATGTATTTCTTCTAATAAAGGTAATTTTTTCAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CQZ0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CQZ0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-608, - strand, RNAz p=0.808993

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-608, - strand, RNAz p=0.808993

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               127-304, gnl|bosTau2|chr19 (32527856-32527679)
               

               
               127-304, gnl|Hg17|chr17 (35333985-35333808)
               

               
               127-304, gnl|Mm7|chr11 (98693157-98692980)
               


               
               457-938, gnl|bosTau2|chr5 (35053066-35052596)
               

               
               457-938, gnl|Hg17|chr12 (54500312-54500802)
               

               
               457-938, gnl|Mm7|chr10 (128320782-128320289)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-304, gnl|bosTau2|chr19 (32527856-32527679)
               

               
               127-304, gnl|Hg17|chr17 (35333985-35333808)
               

               
               127-304, gnl|Mm7|chr11 (98693157-98692980)
               


               
               457-938, gnl|bosTau2|chr5 (35053066-35052596)
               

               
               457-938, gnl|Hg17|chr12 (54500312-54500802)
               

               
               457-938, gnl|Mm7|chr10 (128320782-128320289)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               pla (0.802032)
               

               
               pro (0.512033)
               

               
               nco (0.485201)
               

               
               ill (0.351185)
               

               
               nbm (0.297974)
               

               
               csk (0.281492)
               

               
               cbl (0.229595)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.802032)
               

               
               pro (0.512033)
               

               
               nco (0.485201)
               

               
               ill (0.351185)
               

               
               nbm (0.297974)
               

               
               csk (0.281492)
               

               
               cbl (0.229595)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	127-304, gnl\|bosTau2\|chr19 (32527856-32527679)
	127-304, gnl\|Hg17\|chr17 (35333985-35333808)
	127-304, gnl\|Mm7\|chr11 (98693157-98692980)

	457-938, gnl\|bosTau2\|chr5 (35053066-35052596)
	457-938, gnl\|Hg17\|chr12 (54500312-54500802)
	457-938, gnl\|Mm7\|chr10 (128320782-128320289)

	pla (0.802032)
	pro (0.512033)
	nco (0.485201)
	ill (0.351185)
	nbm (0.297974)
	csk (0.281492)
	cbl (0.229595)
	col (0.195008)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	cut (0.169924)
	ski (0.146735)
	spl (0.143184)
	pty (0.142714)
	cst (0.140036)
	nca (0.136874)
	che (0.136314)
	ssp (0.13552)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	cty (0.10408)