Non-Coding RNA Search

Ss1.1-LyN1-MLN01H050078.5

Sequence:


               
               CTGAGGTACTTCATGCATGGCTTTGTTATTTGGGCAGCTTGGGCTCTGTATCAAGGGGAA
AGCCTTTCTAGCTCAGTGTATTCTGTTTCAGAAACAATTCACAGTGCAACTTGCATACCT
GATAAAGGAATAAGAAATCACTAATATAACAGATGCTTCTTAATTTTGTTGTTTGTCACT
TCAGAAAAGCATATGCATGTTTTTTTTATCTCCCCTGGACTGGATTAATGACAAAGTAGT
CTTGACATCAACTGAGTGTTCTCTGGTGGCTCTTGCAGATTATAAATTTCTGGGCCTAGA
AGAACAACAAGGCAAGGGTTGGGGAGGACCAGCCAGTAGGATTAATTTTGACATATACGT
TACATCCGAAGGTTCTAATCTATACTTTTTTGGTGACCTTGAGAATATGTTTTCCAGTTC
TCAGATTTGTTGGGCCCTGGTAGCATGTGACTTAATTTCCTTGCTTTGGCAAATAGCAAC
ATTTGTTAATCATTTAAGTCTCTAGCTTGAATTTGGCATTATAAAGTATTTTGTTTTTAA
GGCACATATGGAAGAACATTTCGGACAAATTAGGAACCCTGGTAACATTGTAATTTGTGC
ATATCAAGCTATTAAATCCAATGGGATTTGAGAGAGGTGGGGAGAAGAGGTTTAGTGTAG
GTAAGGCTATAGCAGTGTGTGGAGGTAAGGAGGCTGTGGAGAGAACGTTAGAGCTTCTGG
AATCTGGGTCACTGTTTTGTATAGATAGACCAGACTTACCTCTCTGCTTTTGAAGAGCTT
TAAAGACTCATTGTCTACCTGCCTGTCACTGCAGAATGGCATGACTCCTCCCTCTGGAAT
TGCACTTAGGCCTAGTTAGACTACAGTATTCTGGCTGCTTCTCTAACCTAAACCTTTAGT
TCTCCTTGAGAAGTTTTGGGCACTAATCTTCAGGACTAGGGCTTTGAATAGTCAAGAAGA
GGAATTGAGGAGTTCCTATCATGGCTTAGCGGTTAACGAACCTGACTAGCATCCATGAGG
ACTTGGGTTTGATCCCTGGCCTTGCTCAGTGGGTTAAGGATCTGGCGTTGGTTGCCATGA
GCTGTGGTGTAGGTTGCAGACATGGCTCGGATCTGGCGTGGCTGTGGCTGTGGCTGTGGC
ATAGGCCAAGACTACAGCTCTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGGTACTTCATGCATGGCTTTGTTATTTGGGCAGCTTGGGCTCTGTATCAAGGGGAA
AGCCTTTCTAGCTCAGTGTATTCTGTTTCAGAAACAATTCACAGTGCAACTTGCATACCT
GATAAAGGAATAAGAAATCACTAATATAACAGATGCTTCTTAATTTTGTTGTTTGTCACT
TCAGAAAAGCATATGCATGTTTTTTTTATCTCCCCTGGACTGGATTAATGACAAAGTAGT
CTTGACATCAACTGAGTGTTCTCTGGTGGCTCTTGCAGATTATAAATTTCTGGGCCTAGA
AGAACAACAAGGCAAGGGTTGGGGAGGACCAGCCAGTAGGATTAATTTTGACATATACGT
TACATCCGAAGGTTCTAATCTATACTTTTTTGGTGACCTTGAGAATATGTTTTCCAGTTC
TCAGATTTGTTGGGCCCTGGTAGCATGTGACTTAATTTCCTTGCTTTGGCAAATAGCAAC
ATTTGTTAATCATTTAAGTCTCTAGCTTGAATTTGGCATTATAAAGTATTTTGTTTTTAA
GGCACATATGGAAGAACATTTCGGACAAATTAGGAACCCTGGTAACATTGTAATTTGTGC
ATATCAAGCTATTAAATCCAATGGGATTTGAGAGAGGTGGGGAGAAGAGGTTTAGTGTAG
GTAAGGCTATAGCAGTGTGTGGAGGTAAGGAGGCTGTGGAGAGAACGTTAGAGCTTCTGG
AATCTGGGTCACTGTTTTGTATAGATAGACCAGACTTACCTCTCTGCTTTTGAAGAGCTT
TAAAGACTCATTGTCTACCTGCCTGTCACTGCAGAATGGCATGACTCCTCCCTCTGGAAT
TGCACTTAGGCCTAGTTAGACTACAGTATTCTGGCTGCTTCTCTAACCTAAACCTTTAGT
TCTCCTTGAGAAGTTTTGGGCACTAATCTTCAGGACTAGGGCTTTGAATAGTCAAGAAGA
GGAATTGAGGAGTTCCTATCATGGCTTAGCGGTTAACGAACCTGACTAGCATCCATGAGG
ACTTGGGTTTGATCCCTGGCCTTGCTCAGTGGGTTAAGGATCTGGCGTTGGTTGCCATGA
GCTGTGGTGTAGGTTGCAGACATGGCTCGGATCTGGCGTGGCTGTGGCTGTGGCTGTGGC
ATAGGCCAAGACTACAGCTCTGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-317, - strand, RNAz p=0.52127

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, - strand, RNAz p=0.52127

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-703, gnl|bosTau2|chr21 (8084535-8085229)
               

               
               1-703, gnl|Hg17|chr15 (91319180-91319843)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-703, gnl|bosTau2|chr21 (8084535-8085229)
               

               
               1-703, gnl|Hg17|chr15 (91319180-91319843)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-703, gnl\|bosTau2\|chr21 (8084535-8085229)
	1-703, gnl\|Hg17\|chr15 (91319180-91319843)