Non-Coding RNA Search

Ss1.1-LyN1-MLN01H070021.5

Sequence:


               
               CCCTCGGACTTCCTTTCTGCCGGTCTGGGTCATCTGTCTGCCCACCCGTCGCTGGCCCCA
GGCTCGCTCTCTGGCCCCAGCCCTCTCTCCCTCTCTCAGCAGCTGTCTCTTTCGTGCCCG
CTGGCCTGTCTCTTCTTCCCCGCAGTCGCCTCCTTCTCCGCCTGCCTGGGTGGCCGCCAT
GGGCCGGAAGCGGCTCATCACTGACTCCTACCCAGTAGTGAAGAGGAGGGAGGGCCCCGC
TGGGCACAGCAAGGGGGAGCTGGCACTGAAGCTAGAGGAAGAGCCCGAGCCCCCGCCCCC
GAGCGTGGATGAAGCGGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGG
GCCCTGCACAGGGATCACACGGCTGCAGCGCTGGCATCGGGCAGAGCAGATGGGCCTGGC
GCCACCGCCAGAAGTGCGCCAGGTGCTGCAGACTCACCCCGGGGATCCCCGCTTCCAGTG
CAGCCTCTGGCACTTCTACCCCCTTTGAAGCATCACCTAAGACCTCTGCCTGCTACTTGA
GAACCTAAGGACGTAAGCCAGTGCCAGTTGCTGCCCCTTGGCTCAGCTCTGCTGTGAAGT
TTGGCAGGAAGAGTCTCAGAGGAAAGGAAAGAGGCTGAATCTGGAGAGCTCTGCCACTCA
GCCCTGCATCTCCCCAGCAGGCTCCCGGGGCCCCTGCTGAGAACGACACAGCCAGAGCCA
AGCACCTCCTACGTGGAGAGTGGTCTCTGAGGCCAAGGACCTGGCCATGACCCTTCCAAA
GGCTGCCACACGCCTGACCTGAACACCGTGGTTCTTGGGATGATGTGGCAAATTAGGCAC
AGCTTTGGGCAGAACCAGACTCAGGCAGAAGGCAGATGATCTAAGAGGCAAAGAGGCACT
CCCTGCTCCAGGCTGGGAGTCTGAGGGCAGAACTGGTTGAGCTCACGGGGCAAGGGGCTC
GCTAATGCTTATCAATAAAGAACTCTGAGCCTGGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCGGACTTCCTTTCTGCCGGTCTGGGTCATCTGTCTGCCCACCCGTCGCTGGCCCCA
GGCTCGCTCTCTGGCCCCAGCCCTCTCTCCCTCTCTCAGCAGCTGTCTCTTTCGTGCCCG
CTGGCCTGTCTCTTCTTCCCCGCAGTCGCCTCCTTCTCCGCCTGCCTGGGTGGCCGCCAT
GGGCCGGAAGCGGCTCATCACTGACTCCTACCCAGTAGTGAAGAGGAGGGAGGGCCCCGC
TGGGCACAGCAAGGGGGAGCTGGCACTGAAGCTAGAGGAAGAGCCCGAGCCCCCGCCCCC
GAGCGTGGATGAAGCGGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGG
GCCCTGCACAGGGATCACACGGCTGCAGCGCTGGCATCGGGCAGAGCAGATGGGCCTGGC
GCCACCGCCAGAAGTGCGCCAGGTGCTGCAGACTCACCCCGGGGATCCCCGCTTCCAGTG
CAGCCTCTGGCACTTCTACCCCCTTTGAAGCATCACCTAAGACCTCTGCCTGCTACTTGA
GAACCTAAGGACGTAAGCCAGTGCCAGTTGCTGCCCCTTGGCTCAGCTCTGCTGTGAAGT
TTGGCAGGAAGAGTCTCAGAGGAAAGGAAAGAGGCTGAATCTGGAGAGCTCTGCCACTCA
GCCCTGCATCTCCCCAGCAGGCTCCCGGGGCCCCTGCTGAGAACGACACAGCCAGAGCCA
AGCACCTCCTACGTGGAGAGTGGTCTCTGAGGCCAAGGACCTGGCCATGACCCTTCCAAA
GGCTGCCACACGCCTGACCTGAACACCGTGGTTCTTGGGATGATGTGGCAAATTAGGCAC
AGCTTTGGGCAGAACCAGACTCAGGCAGAAGGCAGATGATCTAAGAGGCAAAGAGGCACT
CCCTGCTCCAGGCTGGGAGTCTGAGGGCAGAACTGGTTGAGCTCACGGGGCAAGGGGCTC
GCTAATGCTTATCAATAAAGAACTCTGAGCCTGGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29292_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29292_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               474-576, - strand, RNAz p=0.811218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-576, - strand, RNAz p=0.811218

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               474-997, gnl|bosTau2|chr29 (36285296-36285800)
               

               
               474-997, gnl|Hg17|chr11 (66876076-66875594)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               474-997, gnl|bosTau2|chr29 (36285296-36285800)
               

               
               474-997, gnl|Hg17|chr11 (66876076-66875594)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ill (0.877963)
               

               
               cag (0.453583)
               

               
               cbl (0.344392)
               

               
               cli (0.305623)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.877963)
               

               
               cag (0.453583)
               

               
               cbl (0.344392)
               

               
               cli (0.305623)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	474-997, gnl\|bosTau2\|chr29 (36285296-36285800)
	474-997, gnl\|Hg17\|chr11 (66876076-66875594)

	ill (0.877963)
	cag (0.453583)
	cbl (0.344392)
	cli (0.305623)
	lnt (0.284616)
	cga (0.279096)
	cov (0.264306)
	ese (0.253004)
	cly (0.241284)
	col (0.195008)
	nep (0.183925)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	pty (0.142714)
	ute (0.132784)
	nbm (0.0993246)
	eje (0.0988338)