Ss1.1-LyN1-MLN01H070081.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGAGCCAGTGCCCGGGTGGCGCGCGCGGCAGCTGTTGGCTCTGGCACGGTGCGGGCCA TGGCGTCGTCAGCGTCCTCGACGGCCGACGGGGTGGCGGTGGTGGGCAGCGGCCTCATCG GGCGAAGCTGGGCGATGCTCTTCGCCAGCGGAGGCTTCCGCGTGAAACTCTACGACATCG AGCAGCAGCAGGTGACAGGCGCCCTGGACACCATCCGAAAAGAGATGAAGTTGCTGGAGC AGTCCGGTGCCCTGAAGGGCTCGCTGGGCGCCGAAGAGCAGCTGGCGCTCATCAGCGGGT GCTCCGACCTCCGGGAGGCAGTAGAGGGCACAGTGCACATCCAGGAATGTGTTCCGGAAA ACCTAGAACTGAAGCAGCAGCTTTTTGCTCAGCTGGATCAAATCGTCGATGGTAACGTGG TCCTGAGCAGCTCCAGCTCCTGCCTCCTGCCATCCAAGCTGTTTGCTGGCCTGGTGCACG TGCGGCAGTGCCTTGTGGCGCATCCTGTAAACCCGCCCTATCATGTCCCGCTGGTTGAGC TGGTCCCACACCCGGAGACGGCCCCCGCCACAATGGACCGAACCTACGCCCTGATGCGGC AGATCGGCCAGTCCCCCGTCCGCATCCTGAAGGAGGTGGACGGCTTCGCCCTGAACCGCC TGCAGTACGCGCTCATCGGCGAGGCCTGGCGGCTGGTGGAGGCAGGAATCGTGTCTCCGG GCGACCTGGACCTCGTCATGTCCGACGGCCTGGGCCTGCGATACGCGTTCATCGGCCCCC TGGAGACCATGCACCTCAACGCGGAAGGTATGCTGAGCTACTGTGACAGGTACCGTGAAG GCATGAAACGTGTCCTAAAGACTTTTGGACCCATTCCAGAGTTTTCCGGGGCCGTGGCTG AAAAAGTGCACCAGGCCATGTGTGTGAAAGTTCCCGATGACCCAGAGCACTTAGCTGCCC GAAGGGAGTGGAGGGATGGCTGCCTCATGAGACTCGCCAAACTGAAGGGCCAGGTGCAGC CGCCGTAAGGCCTCCCGCTGCTCCTGAGTCCTGCGCGCCCCCGTTTCAGACACATGCCAT CGCCCCGAGAGCGCCGGAGGCCACAGGACCTTGGCTCGCCGAGTCCGACACACTCTTGCC TTGGCGGGCACGGCGGTGGAAGGCTGGGCCTCCGCCCCTTCTGACTGTATCCCACACTTG GGGTTGTCACAGCCGCACTTGGGTGGGAGGGCTGCTGAGTCCCTGCCTCCCGCCTCCCCC CCCACCCCCGGGGGCAATCGGGAGGGCAAATCGTCAGGTTTTACCGTTGATTTTTAAGGT GATTACATGGGGCTACATTTTACAGCCGGTGATTGTCATTTTGAATTGTTTTAATCTGCA GCAAAATGTTTTTATAATTCGCTTCTGGTCCCTTGCTGAGGACTCCCCGGGCCCGCGTTT CTGAGGCAACTGCATTCATTTTGTTTGACTTATTCCAATAAAAGCTTTTGATGCCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGAGCCAGTGCCCGGGTGGCGCGCGCGGCAGCTGTTGGCTCTGGCACGGTGCGGGCCA TGGCGTCGTCAGCGTCCTCGACGGCCGACGGGGTGGCGGTGGTGGGCAGCGGCCTCATCG GGCGAAGCTGGGCGATGCTCTTCGCCAGCGGAGGCTTCCGCGTGAAACTCTACGACATCG AGCAGCAGCAGGTGACAGGCGCCCTGGACACCATCCGAAAAGAGATGAAGTTGCTGGAGC AGTCCGGTGCCCTGAAGGGCTCGCTGGGCGCCGAAGAGCAGCTGGCGCTCATCAGCGGGT GCTCCGACCTCCGGGAGGCAGTAGAGGGCACAGTGCACATCCAGGAATGTGTTCCGGAAA ACCTAGAACTGAAGCAGCAGCTTTTTGCTCAGCTGGATCAAATCGTCGATGGTAACGTGG TCCTGAGCAGCTCCAGCTCCTGCCTCCTGCCATCCAAGCTGTTTGCTGGCCTGGTGCACG TGCGGCAGTGCCTTGTGGCGCATCCTGTAAACCCGCCCTATCATGTCCCGCTGGTTGAGC TGGTCCCACACCCGGAGACGGCCCCCGCCACAATGGACCGAACCTACGCCCTGATGCGGC AGATCGGCCAGTCCCCCGTCCGCATCCTGAAGGAGGTGGACGGCTTCGCCCTGAACCGCC TGCAGTACGCGCTCATCGGCGAGGCCTGGCGGCTGGTGGAGGCAGGAATCGTGTCTCCGG GCGACCTGGACCTCGTCATGTCCGACGGCCTGGGCCTGCGATACGCGTTCATCGGCCCCC TGGAGACCATGCACCTCAACGCGGAAGGTATGCTGAGCTACTGTGACAGGTACCGTGAAG GCATGAAACGTGTCCTAAAGACTTTTGGACCCATTCCAGAGTTTTCCGGGGCCGTGGCTG AAAAAGTGCACCAGGCCATGTGTGTGAAAGTTCCCGATGACCCAGAGCACTTAGCTGCCC GAAGGGAGTGGAGGGATGGCTGCCTCATGAGACTCGCCAAACTGAAGGGCCAGGTGCAGC CGCCGTAAGGCCTCCCGCTGCTCCTGAGTCCTGCGCGCCCCCGTTTCAGACACATGCCAT CGCCCCGAGAGCGCCGGAGGCCACAGGACCTTGGCTCGCCGAGTCCGACACACTCTTGCC TTGGCGGGCACGGCGGTGGAAGGCTGGGCCTCCGCCCCTTCTGACTGTATCCCACACTTG GGGTTGTCACAGCCGCACTTGGGTGGGAGGGCTGCTGAGTCCCTGCCTCCCGCCTCCCCC CCCACCCCCGGGGGCAATCGGGAGGGCAAATCGTCAGGTTTTACCGTTGATTTTTAAGGT GATTACATGGGGCTACATTTTACAGCCGGTGATTGTCATTTTGAATTGTTTTAATCTGCA GCAAAATGTTTTTATAATTCGCTTCTGGTCCCTTGCTGAGGACTCCCCGGGCCCGCGTTT CTGAGGCAACTGCATTCATTTTGTTTGACTTATTCCAATAAAAGCTTTTGATGCCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 3-109, gnl|bosTau2|chr12 (19991795-19991901) | |
| 219-345, gnl|bosTau2|chr12 (20009140-20009266) | |
| 219-345, gnl|canFam2|chr25 (20603480-20603158) | |
| 219-345, gnl|echTel1|scaffold_319392 (7273-7016) | |
| 219-345, gnl|hg17|chr13 (19961352-19961642) | |
| 219-345, gnl|Hg17|chr13 (19961634-19961508) | |
| 219-345, gnl|mm7|chr14 (52230647-52230935) | |
| 219-345, gnl|Mm7|chr14 (52230927-52230801) | |
| 219-345, gnl|panTro1|chr14 (18864294-18864584) | |
| 219-345, gnl|rheMac2|chr17 (1102164-1101899) | |
| 219-345, gnl|rn3|chr15 (36417120-36417410) | |
| 507-702, gnl|bosTau2|chr12 (20033665-20033860) | |
| 507-702, gnl|Hg17|chr13 (19904435-19904240) | |
| 507-702, gnl|Mm7|chr14 (52171626-52171431) | |
| 806-922, gnl|bosTau2|chr12 (20046783-20046898) | |
| 806-922, gnl|canFam2|chr25 (20716678-20716467) | |
| 806-922, gnl|dasNov1|scaffold_7154 (49235-49447) | |
| 806-922, gnl|echTel1|scaffold_321349 (40764-40969) | |
| 806-922, gnl|hg17|chr13 (19876687-19876930) | |
| 806-922, gnl|Hg17|chr13 (19876882-19876767) | |
| 806-922, gnl|loxAfr1|scaffold_14018 (34610-34399) | |
| 806-922, gnl|mm7|chr14 (52143678-52143908) | |
| 806-922, gnl|Mm7|chr14 (52143864-52143749) | |
| 806-922, gnl|monDom2|scaffold_15 (28146179-28146428) | |
| 806-922, gnl|oryCun1|scaffold_181202 (1876-1685) | |
| 806-922, gnl|panTro1|chr14 (18768832-18769074) | |
| 806-922, gnl|rheMac2|chr17 (1178518-1178292) | |
| 806-922, gnl|rn3|chr15 (36336693-36336910) | |
| 1255-1483, gnl|bosTau2|chr12 (20047530-20047755) | |
| 1255-1483, gnl|Hg17|chr13 (19876040-19875827) | |
| 1255-1483, gnl|Mm7|chr14 (52143064-52142846) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-109, gnl|bosTau2|chr12 (19991795-19991901) | |
| 219-345, gnl|bosTau2|chr12 (20009140-20009266) | |
| 219-345, gnl|canFam2|chr25 (20603480-20603158) | |
| 219-345, gnl|echTel1|scaffold_319392 (7273-7016) | |
| 219-345, gnl|hg17|chr13 (19961352-19961642) | |
| 219-345, gnl|Hg17|chr13 (19961634-19961508) | |
| 219-345, gnl|mm7|chr14 (52230647-52230935) | |
| 219-345, gnl|Mm7|chr14 (52230927-52230801) | |
| 219-345, gnl|panTro1|chr14 (18864294-18864584) | |
| 219-345, gnl|rheMac2|chr17 (1102164-1101899) | |
| 219-345, gnl|rn3|chr15 (36417120-36417410) | |
| 507-702, gnl|bosTau2|chr12 (20033665-20033860) | |
| 507-702, gnl|Hg17|chr13 (19904435-19904240) | |
| 507-702, gnl|Mm7|chr14 (52171626-52171431) | |
| 806-922, gnl|bosTau2|chr12 (20046783-20046898) | |
| 806-922, gnl|canFam2|chr25 (20716678-20716467) | |
| 806-922, gnl|dasNov1|scaffold_7154 (49235-49447) | |
| 806-922, gnl|echTel1|scaffold_321349 (40764-40969) | |
| 806-922, gnl|hg17|chr13 (19876687-19876930) | |
| 806-922, gnl|Hg17|chr13 (19876882-19876767) | |
| 806-922, gnl|loxAfr1|scaffold_14018 (34610-34399) | |
| 806-922, gnl|mm7|chr14 (52143678-52143908) | |
| 806-922, gnl|Mm7|chr14 (52143864-52143749) | |
| 806-922, gnl|monDom2|scaffold_15 (28146179-28146428) | |
| 806-922, gnl|oryCun1|scaffold_181202 (1876-1685) | |
| 806-922, gnl|panTro1|chr14 (18768832-18769074) | |
| 806-922, gnl|rheMac2|chr17 (1178518-1178292) | |
| 806-922, gnl|rn3|chr15 (36336693-36336910) | |
| 1255-1483, gnl|bosTau2|chr12 (20047530-20047755) | |
| 1255-1483, gnl|Hg17|chr13 (19876040-19875827) | |
| 1255-1483, gnl|Mm7|chr14 (52143064-52142846) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cki (0.826173) | |
| kid (0.389206) | |
| nco (0.323468) | |
| pty (0.285429) | |
| cbe (0.239234) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cje (0.165235) | |
| eli (0.151814) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.826173) | |
| kid (0.389206) | |
| nco (0.323468) | |
| pty (0.285429) | |
| cbe (0.239234) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cje (0.165235) | |
| eli (0.151814) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| eje (0.0988338) |