Non-Coding RNA Search

Ss1.1-LyN1-MLN01H080026.5.5

Sequence:


               
               GGGCACAGAACTAAAGGCCGGGAGGACGTTCGGTCTCTGTGAGCCGCAGCCTTTCCCAGG
GAGCGGTTGTGTGTTCGCCATCTTAGGGAGAAGATGTTCTCGTCCGTGGCGCACCTGGCG
CGGGCGAACCCCTTCAACGCACCGCACCTGCAGCTGGTGCAGGATGGTCTCGCCGGCCCC
CGCAGCAGCCCCGACGGGCCCCCGGGCCCACCTCGCCGCACCCGCAACCTGGCGGCCGCC
GCTGTGGAAGAGTACAGTTGTGAATATGGCTCCATGAAGTTTTATGCACTGTGTGGCTTT
GGTGGGGTCTTAAGTTGTGGTCTGACACACACTGCTGTTGTTCCTCTGGATTTAGTGAAA
TGCCGTATGCAGGTGGACCCGAACAAGTACAAGGGCATATTTAATGGATTCTCAATTACA
CTTAAAGAGGATGGTGTTCGCGGCTTGGCCAAAGGATGGGCTCCGACTTTCATTGGCTAC
TCCTTGCAGGGGCTCTGCAAGTTTGGCTTTTATGAAGTCTTCAAAGTTTTGTATAGCAAT
ATGCTTGGAGAGGAGAATGCCTATCTCTGGCGCACATCACTGTATTTGGCTGCCTCTGCC
AGTGCTGAATTCTTTGCTGACATTGCTCTGGCTCCTATGGAAGCTGCTAAGGTCCGAATT
CAAACTCAGCCAGGTTATGCCAACACTTTGAGGGATGCAGCTCCCAAAATGTATCAGGAA
GAAGGCTTAAAGGCATTCTACAAGGGGGTTGCTCCTCTCTGGATGAGACAGATACCATAT
ACCATGATGAAGTTTGCCTGCTTTGAACGTACGGTTGAAGCATTGTACAAGTTTGTGGTT
CCCAAGCCCCGAAGTGAATGTTCAAAGCCAGAGCAGCTGGTTGTCACATTTGTGGCAGGT
TACATAGCTGGCGTCTTCTGTGCCATTGTTTCTCACCCTGCTGATTCTGTGGTATCTGTG
TTGAATAAAGAGAAGGGTAGCAGTGCTTCTCAGGTCCTCCGGAGACTTGGATTTAGAGGT
GTATGGAAGGGACTCTTTGCCCGTATCATCATGATTGGCACTCTGACTGCACTACAGTGG
TTCATCTATGACTCTGTGAAGGTCTACTTCAGGCTCCCTCGCCCTCCTCCACCTGAGATG
CCAGAGTCTTTGAAGAAGAAGCTTGGGTACACTCAGTAGATAGATGAAAGCAAATGTGGA
CTGAATCTGCTTGTTGATCAGTGTTGAGGAAGATGCAAAAGAAACTTTTATATATTTGAC
AATGTAGGAAATTGTCTATTCCTGATATAATTACTGTAGTACTCTTGCCAAAGGCAAGAG
TTTCAAACTTATTGTTGAAATAAACCCAAATGTTAATGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACAGAACTAAAGGCCGGGAGGACGTTCGGTCTCTGTGAGCCGCAGCCTTTCCCAGG
GAGCGGTTGTGTGTTCGCCATCTTAGGGAGAAGATGTTCTCGTCCGTGGCGCACCTGGCG
CGGGCGAACCCCTTCAACGCACCGCACCTGCAGCTGGTGCAGGATGGTCTCGCCGGCCCC
CGCAGCAGCCCCGACGGGCCCCCGGGCCCACCTCGCCGCACCCGCAACCTGGCGGCCGCC
GCTGTGGAAGAGTACAGTTGTGAATATGGCTCCATGAAGTTTTATGCACTGTGTGGCTTT
GGTGGGGTCTTAAGTTGTGGTCTGACACACACTGCTGTTGTTCCTCTGGATTTAGTGAAA
TGCCGTATGCAGGTGGACCCGAACAAGTACAAGGGCATATTTAATGGATTCTCAATTACA
CTTAAAGAGGATGGTGTTCGCGGCTTGGCCAAAGGATGGGCTCCGACTTTCATTGGCTAC
TCCTTGCAGGGGCTCTGCAAGTTTGGCTTTTATGAAGTCTTCAAAGTTTTGTATAGCAAT
ATGCTTGGAGAGGAGAATGCCTATCTCTGGCGCACATCACTGTATTTGGCTGCCTCTGCC
AGTGCTGAATTCTTTGCTGACATTGCTCTGGCTCCTATGGAAGCTGCTAAGGTCCGAATT
CAAACTCAGCCAGGTTATGCCAACACTTTGAGGGATGCAGCTCCCAAAATGTATCAGGAA
GAAGGCTTAAAGGCATTCTACAAGGGGGTTGCTCCTCTCTGGATGAGACAGATACCATAT
ACCATGATGAAGTTTGCCTGCTTTGAACGTACGGTTGAAGCATTGTACAAGTTTGTGGTT
CCCAAGCCCCGAAGTGAATGTTCAAAGCCAGAGCAGCTGGTTGTCACATTTGTGGCAGGT
TACATAGCTGGCGTCTTCTGTGCCATTGTTTCTCACCCTGCTGATTCTGTGGTATCTGTG
TTGAATAAAGAGAAGGGTAGCAGTGCTTCTCAGGTCCTCCGGAGACTTGGATTTAGAGGT
GTATGGAAGGGACTCTTTGCCCGTATCATCATGATTGGCACTCTGACTGCACTACAGTGG
TTCATCTATGACTCTGTGAAGGTCTACTTCAGGCTCCCTCGCCCTCCTCCACCTGAGATG
CCAGAGTCTTTGAAGAAGAAGCTTGGGTACACTCAGTAGATAGATGAAAGCAAATGTGGA
CTGAATCTGCTTGTTGATCAGTGTTGAGGAAGATGCAAAAGAAACTTTTATATATTTGAC
AATGTAGGAAATTGTCTATTCCTGATATAATTACTGTAGTACTCTTGCCAAAGGCAAGAG
TTTCAAACTTATTGTTGAAATAAACCCAAATGTTAATGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30802109|gb|AAH51367.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30802109|gb|AAH51367.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               427-545, - strand, RNAz p=0.990154

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-545, - strand, RNAz p=0.990154

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               234-1127, gnl|bosTau2|chr3 (61450025-61449132)
               

               
               234-1127, gnl|Hg17|chr1 (53616997-53616103)
               

               
               234-1127, gnl|Mm7|chr10 (90680816-90675987)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               234-1127, gnl|bosTau2|chr3 (61450025-61449132)
               

               
               234-1127, gnl|Hg17|chr1 (53616997-53616103)
               

               
               234-1127, gnl|Mm7|chr10 (90680816-90675987)

Expressed library(ies): 88 entry(ies)

More info

Expressed library(ies): 88 entry(ies)

Help | Less info


               
               hea (7.56646)
               

               
               sug (7.2556)
               

               
               ssp (3.79455)
               

               
               ldo (3.6861)
               

               
               ste (3.51541)
               

               
               vin (3.32557)
               

               
               tbr (3.08356)
               

               
               isp (3.00752)
               

               
               che (2.45365)
               

               
               ova (2.06612)
               

               
               sin (1.92442)
               

               
               sme (1.83262)
               

               
               cov (1.71799)
               

               
               cst (1.68044)
               

               
               cmu (1.67754)
               

               
               bfe (1.49858)
               

               
               nco (1.4556)
               

               
               kid (1.42709)
               

               
               mga (1.28164)
               

               
               csk (1.26671)
               

               
               mas (1.26183)
               

               
               sto (1.25877)
               

               
               hlv (1.25331)
               

               
               fat (1.17942)
               

               
               spl (1.14548)
               

               
               bla (1.11912)
               

               
               nms (1.06929)
               

               
               fbs (1.05208)
               

               
               rec (1.03842)
               

               
               pro (1.02407)
               

               
               spc (1.02029)
               

               
               pty (0.999001)
               

               
               jej (0.989218)
               

               
               eje (0.988338)
               

               
               col (0.975039)
               

               
               sag (0.913576)
               

               
               ski (0.880411)
               

               
               lin (0.873617)
               

               
               tra (0.861645)
               

               
               cut (0.849618)
               

               
               fce (0.814775)
               

               
               nmm (0.796813)
               

               
               ret (0.7724)
               

               
               ese (0.759013)
               

               
               nep (0.7357)
               

               
               cbe (0.717703)
               

               
               gul (0.710353)
               

               
               pan (0.707881)
               

               
               ton (0.702001)
               

               
               mgp (0.692042)
               

               
               lyg (0.665513)
               

               
               csp (0.644745)
               

               
               thg (0.633955)
               

               
               fco (0.628832)
               

               
               tes (0.623441)
               

               
               cag (0.604778)
               

               
               pgl (0.592417)
               

               
               aor (0.585823)
               

               
               nlu (0.575043)
               

               
               mgm (0.541028)
               

               
               cbr (0.511902)
               

               
               fhi (0.508733)
               

               
               cki (0.495704)
               

               
               eep (0.490256)
               

               
               cly (0.482567)
               

               
               eru (0.480192)
               

               
               med (0.465008)
               

               
               ecc (0.46014)
               

               
               hyp (0.42851)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               cbl (0.344392)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               fcc (0.197785)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 88 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (7.56646)
               

               
               sug (7.2556)
               

               
               ssp (3.79455)
               

               
               ldo (3.6861)
               

               
               ste (3.51541)
               

               
               vin (3.32557)
               

               
               tbr (3.08356)
               

               
               isp (3.00752)
               

               
               che (2.45365)
               

               
               ova (2.06612)
               

               
               sin (1.92442)
               

               
               sme (1.83262)
               

               
               cov (1.71799)
               

               
               cst (1.68044)
               

               
               cmu (1.67754)
               

               
               bfe (1.49858)
               

               
               nco (1.4556)
               

               
               kid (1.42709)
               

               
               mga (1.28164)
               

               
               csk (1.26671)
               

               
               mas (1.26183)
               

               
               sto (1.25877)
               

               
               hlv (1.25331)
               

               
               fat (1.17942)
               

               
               spl (1.14548)
               

               
               bla (1.11912)
               

               
               nms (1.06929)
               

               
               fbs (1.05208)
               

               
               rec (1.03842)
               

               
               pro (1.02407)
               

               
               spc (1.02029)
               

               
               pty (0.999001)
               

               
               jej (0.989218)
               

               
               eje (0.988338)
               

               
               col (0.975039)
               

               
               sag (0.913576)
               

               
               ski (0.880411)
               

               
               lin (0.873617)
               

               
               tra (0.861645)
               

               
               cut (0.849618)
               

               
               fce (0.814775)
               

               
               nmm (0.796813)
               

               
               ret (0.7724)
               

               
               ese (0.759013)
               

               
               nep (0.7357)
               

               
               cbe (0.717703)
               

               
               gul (0.710353)
               

               
               pan (0.707881)
               

               
               ton (0.702001)
               

               
               mgp (0.692042)
               

               
               lyg (0.665513)
               

               
               csp (0.644745)
               

               
               thg (0.633955)
               

               
               fco (0.628832)
               

               
               tes (0.623441)
               

               
               cag (0.604778)
               

               
               pgl (0.592417)
               

               
               aor (0.585823)
               

               
               nlu (0.575043)
               

               
               mgm (0.541028)
               

               
               cbr (0.511902)
               

               
               fhi (0.508733)
               

               
               cki (0.495704)
               

               
               eep (0.490256)
               

               
               cly (0.482567)
               

               
               eru (0.480192)
               

               
               med (0.465008)
               

               
               ecc (0.46014)
               

               
               hyp (0.42851)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               cbl (0.344392)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               fcc (0.197785)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	234-1127, gnl\|bosTau2\|chr3 (61450025-61449132)
	234-1127, gnl\|Hg17\|chr1 (53616997-53616103)
	234-1127, gnl\|Mm7\|chr10 (90680816-90675987)

	hea (7.56646)
	sug (7.2556)
	ssp (3.79455)
	ldo (3.6861)
	ste (3.51541)
	vin (3.32557)
	tbr (3.08356)
	isp (3.00752)
	che (2.45365)
	ova (2.06612)
	sin (1.92442)
	sme (1.83262)
	cov (1.71799)
	cst (1.68044)
	cmu (1.67754)
	bfe (1.49858)
	nco (1.4556)
	kid (1.42709)
	mga (1.28164)
	csk (1.26671)
	mas (1.26183)
	sto (1.25877)
	hlv (1.25331)
	fat (1.17942)
	spl (1.14548)
	bla (1.11912)
	nms (1.06929)
	fbs (1.05208)
	rec (1.03842)
	pro (1.02407)
	spc (1.02029)
	pty (0.999001)
	jej (0.989218)
	eje (0.988338)
	col (0.975039)
	sag (0.913576)
	ski (0.880411)
	lin (0.873617)
	tra (0.861645)
	cut (0.849618)
	fce (0.814775)
	nmm (0.796813)
	ret (0.7724)
	ese (0.759013)
	nep (0.7357)
	cbe (0.717703)
	gul (0.710353)
	pan (0.707881)
	ton (0.702001)
	mgp (0.692042)
	lyg (0.665513)
	csp (0.644745)
	thg (0.633955)
	fco (0.628832)
	tes (0.623441)
	cag (0.604778)
	pgl (0.592417)
	aor (0.585823)
	nlu (0.575043)
	mgm (0.541028)
	cbr (0.511902)
	fhi (0.508733)
	cki (0.495704)
	eep (0.490256)
	cly (0.482567)
	eru (0.480192)
	med (0.465008)
	ecc (0.46014)
	hyp (0.42851)
	amn (0.417711)
	pla (0.401016)
	elu (0.385356)
	ebs (0.354904)
	cbl (0.344392)
	jca (0.34188)
	eye (0.341006)
	lun (0.300978)
	liv (0.292569)
	cga (0.279096)
	nca (0.273748)
	fcc (0.197785)
	cli (0.152812)
	eli (0.151814)
	lnt (0.142308)
	ute (0.132784)
	clu (0.119646)
	cty (0.10408)
	nbm (0.0993246)