Ss1.1-LyN1-MLN01H080062.5.5
|
GGCGAGCAGCGGCGGCGGCGCGGAGAGGCGCAGCGGAGGTTTTCCTGGTTTCGGACCCCA
GCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAACAGCCACTGCTTCGCCAGAG
AGAAGGAGGGGGATAAACCCAGCGCCACCGTCCACGCCACCCGCACCATGCCGCTCCTCA
GCCTGCACAGCCGCGGAGGCCGCAGCAGCGAGAGTTCCAGGGTCTCCATCAACTGCTGTA
GTAACCTGGGTCCAGGGCCTCGGTGGTGCTCCTGATGTCCCTCACCCACCCCTGAAGATC
CCAGGTGGGCGAGGGAATAGTCAGAGGGATCACAATCTTTCAGCTAATTTATTTTACTCT
GATAATCGGCTGAATGTAACAGAGGAACTAACGTCTAATAACAAGACGAGAATTTTAAAC
GTCCAATCCAGGCTCACAGATGCCAAACACATTAACTGGAGAGCGGTGCTGAGCAATAGC
TGCCTCTACATCGAGATCCCAGGCGGCGCTCTGCCCGAGGGGAGCAAGGACAGCTTTGCA
GTTCTTCTCGAATTTGCTGAGGAGCAGCTCCACGCTGACCATGTCTTCATTTGCTTCCAC
AAGAACCGCGAGGACAGAGCCGCCTTGCTCCGTACCTTCAGCTTTTTGGGCTTTGAGATT
GTGAGACCGGGGCATCCCCTTGTCCCCAAGAGACCCGACGCTTGCTTCATGGCCTACACG
TTTGAGAGAGAGTCCTCTGGTGAGGAGGAGTAGTGTGATGCCTGGGCCCTTGGCCTCGAT
CGCAGTCCCTTGTGTGCGCTTTGTGCTGCGCCTCTGCGGGTGGTGTGATTAACTGCGTGC
TGACCCATGTCAGCCTGCTTCACCTGCTGGGTTTGTCCGCATGTTGTAATTGTGCAAATA
AACGCTCACTCCAAATTAGCCGTGTATTTCTTGGAAGTTTAATATTGTGTTTGTGATACT
GAAGTATTTGCTTTAATTCTAAATAAAAATTTATATTTTACTTTTTTATTGCTGGTTTAA
GATGATTCAGATTATCCTTGTTCTTGGAGGAGGAGTTTCTTATTTTGAAGTTTTTTGGAA
ACAGTCTTAGGTCTCTTAACTTGGAAAGATAATAATCTACTCTTCTATTGCTCTCAAAAA
TCTGAATAAAAGTGATTATTCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCGAGCAGCGGCGGCGGCGCGGAGAGGCGCAGCGGAGGTTTTCCTGGTTTCGGACCCCA
GCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAACAGCCACTGCTTCGCCAGAG
AGAAGGAGGGGGATAAACCCAGCGCCACCGTCCACGCCACCCGCACCATGCCGCTCCTCA
GCCTGCACAGCCGCGGAGGCCGCAGCAGCGAGAGTTCCAGGGTCTCCATCAACTGCTGTA
GTAACCTGGGTCCAGGGCCTCGGTGGTGCTCCTGATGTCCCTCACCCACCCCTGAAGATC
CCAGGTGGGCGAGGGAATAGTCAGAGGGATCACAATCTTTCAGCTAATTTATTTTACTCT
GATAATCGGCTGAATGTAACAGAGGAACTAACGTCTAATAACAAGACGAGAATTTTAAAC
GTCCAATCCAGGCTCACAGATGCCAAACACATTAACTGGAGAGCGGTGCTGAGCAATAGC
TGCCTCTACATCGAGATCCCAGGCGGCGCTCTGCCCGAGGGGAGCAAGGACAGCTTTGCA
GTTCTTCTCGAATTTGCTGAGGAGCAGCTCCACGCTGACCATGTCTTCATTTGCTTCCAC
AAGAACCGCGAGGACAGAGCCGCCTTGCTCCGTACCTTCAGCTTTTTGGGCTTTGAGATT
GTGAGACCGGGGCATCCCCTTGTCCCCAAGAGACCCGACGCTTGCTTCATGGCCTACACG
TTTGAGAGAGAGTCCTCTGGTGAGGAGGAGTAGTGTGATGCCTGGGCCCTTGGCCTCGAT
CGCAGTCCCTTGTGTGCGCTTTGTGCTGCGCCTCTGCGGGTGGTGTGATTAACTGCGTGC
TGACCCATGTCAGCCTGCTTCACCTGCTGGGTTTGTCCGCATGTTGTAATTGTGCAAATA
AACGCTCACTCCAAATTAGCCGTGTATTTCTTGGAAGTTTAATATTGTGTTTGTGATACT
GAAGTATTTGCTTTAATTCTAAATAAAAATTTATATTTTACTTTTTTATTGCTGGTTTAA
GATGATTCAGATTATCCTTGTTCTTGGAGGAGGAGTTTCTTATTTTGAAGTTTTTTGGAA
ACAGTCTTAGGTCTCTTAACTTGGAAAGATAATAATCTACTCTTCTATTGCTCTCAAAAA
TCTGAATAAAAGTGATTATTCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
273-331, RF00381;Antizyme_FSE; (AC004152.1/16641-16699), blast E-value=1e-23 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
273-331, RF00381;Antizyme_FSE; (AC004152.1/16641-16699), blast E-value=1e-23 |
Human gene identifier and UTR site,
human gene reading direction
|
1-142, gnl|bosTau2|chr13 (28790890-28790749) |
|
1-142, gnl|Hg17|chr19 (2220530-2220671) |
|
1-142, gnl|Mm7|chr17 (15517319-15517178) |
| |
|
361-533, gnl|bosTau2|chr7 (18063563-18063391) |
|
361-533, gnl|canFam2|chr20 (59910839-59910669) |
|
361-533, gnl|dasNov1|scaffold_36699 (946-1108) |
|
361-533, gnl|echTel1|scaffold_303220 (43748-43918) |
|
361-533, gnl|fr1|chrUn (77752770-77752597) |
|
361-533, gnl|hg17|chr1 (40267835-40268005) |
|
361-533, gnl|Hg17|chr19 (2222781-2222953) |
|
361-533, gnl|loxAfr1|scaffold_73348 (7857-8021) |
|
361-533, gnl|Mm7|chr10 (80618066-80618238) |
|
361-533, gnl|mm7|chr17 (15516960-15516790) |
|
361-533, gnl|monDom2|scaffold_2 (52681222-52681052) |
|
361-533, gnl|oryCun1|scaffold_182934 (4004-3873) |
|
361-533, gnl|panTro1|chr1 (41159936-41160109) |
|
361-533, gnl|rheMac2|chr19 (2073145-2073315) |
|
361-533, gnl|rn3|chr7 (10395320-10395073) |
|
361-533, gnl|tetNig1|chrUn_random (42513074-42513250) |
| |
|
618-1164, gnl|bosTau2|chr7 (18062729-18062177) |
|
618-1164, gnl|Hg17|chr19 (2223969-2224486) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-142, gnl|bosTau2|chr13 (28790890-28790749) |
|
1-142, gnl|Hg17|chr19 (2220530-2220671) |
|
1-142, gnl|Mm7|chr17 (15517319-15517178) |
| |
|
361-533, gnl|bosTau2|chr7 (18063563-18063391) |
|
361-533, gnl|canFam2|chr20 (59910839-59910669) |
|
361-533, gnl|dasNov1|scaffold_36699 (946-1108) |
|
361-533, gnl|echTel1|scaffold_303220 (43748-43918) |
|
361-533, gnl|fr1|chrUn (77752770-77752597) |
|
361-533, gnl|hg17|chr1 (40267835-40268005) |
|
361-533, gnl|Hg17|chr19 (2222781-2222953) |
|
361-533, gnl|loxAfr1|scaffold_73348 (7857-8021) |
|
361-533, gnl|Mm7|chr10 (80618066-80618238) |
|
361-533, gnl|mm7|chr17 (15516960-15516790) |
|
361-533, gnl|monDom2|scaffold_2 (52681222-52681052) |
|
361-533, gnl|oryCun1|scaffold_182934 (4004-3873) |
|
361-533, gnl|panTro1|chr1 (41159936-41160109) |
|
361-533, gnl|rheMac2|chr19 (2073145-2073315) |
|
361-533, gnl|rn3|chr7 (10395320-10395073) |
|
361-533, gnl|tetNig1|chrUn_random (42513074-42513250) |
| |
|
618-1164, gnl|bosTau2|chr7 (18062729-18062177) |
|
618-1164, gnl|Hg17|chr19 (2223969-2224486) |
|
cje (4.13087) |
|
cmu (3.54147) |
|
cki (3.13946) |
|
cbl (2.86993) |
|
che (2.8626) |
|
cst (2.66069) |
|
nlu (2.49185) |
|
ill (2.2827) |
|
pro (2.04813) |
|
nje (1.99104) |
|
cag (1.96553) |
|
csp (1.93424) |
|
duo (1.90081) |
|
fco (1.8865) |
|
sto (1.79824) |
|
fty (1.7584) |
|
cov (1.71799) |
|
fhi (1.69578) |
|
cbe (1.67464) |
|
med (1.62753) |
|
ssp (1.62624) |
|
jej (1.58275) |
|
nco (1.4556) |
|
ldo (1.45504) |
|
pgl (1.4218) |
|
ste (1.35208) |
|
cly (1.32706) |
|
csk (1.26671) |
|
cut (1.18946) |
|
aor (1.17165) |
|
cte (1.17096) |
|
elu (1.15607) |
|
nms (1.06929) |
|
ute (1.06228) |
|
fbs (1.05208) |
|
spc (1.02029) |
|
spl (1.00229) |
|
pty (0.999001) |
|
nbm (0.993246) |
|
cty (0.936719) |
|
nmm (0.929615) |
|
cli (0.91687) |
|
eje (0.889504) |
|
ese (0.885516) |
|
fat (0.884564) |
|
rec (0.865351) |
|
lnt (0.853849) |
|
eye (0.852515) |
|
cga (0.837287) |
|
tes (0.831255) |
|
fcc (0.791139) |
|
tbr (0.770891) |
|
sug (0.763747) |
|
lun (0.752445) |
|
sag (0.730861) |
|
hyp (0.714184) |
|
ton (0.702001) |
|
sin (0.69979) |
|
mgp (0.692042) |
|
nca (0.684369) |
|
bla (0.621736) |
|
hea (0.613497) |
|
sme (0.610874) |
|
clu (0.598229) |
|
ebs (0.591506) |
|
jca (0.569801) |
|
ova (0.516529) |
|
mcp (0.511945) |
|
thg (0.507164) |
|
eep (0.490256) |
|
mga (0.480615) |
|
eru (0.480192) |
|
eli (0.455443) |
|
bfe (0.449573) |
|
hlv (0.417769) |
|
amn (0.417711) |
|
fli (0.405762) |
|
pla (0.401016) |
|
lyg (0.399308) |
|
kid (0.389206) |
|
tra (0.369276) |
|
nep (0.36785) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
vin (0.332557) |
|
liv (0.292569) |
|
cbr (0.255951) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
mas (0.210305) |
|
col (0.195008) |
|
cje (4.13087) |
|
cmu (3.54147) |
|
cki (3.13946) |
|
cbl (2.86993) |
|
che (2.8626) |
|
cst (2.66069) |
|
nlu (2.49185) |
|
ill (2.2827) |
|
pro (2.04813) |
|
nje (1.99104) |
|
cag (1.96553) |
|
csp (1.93424) |
|
duo (1.90081) |
|
fco (1.8865) |
|
sto (1.79824) |
|
fty (1.7584) |
|
cov (1.71799) |
|
fhi (1.69578) |
|
cbe (1.67464) |
|
med (1.62753) |
|
ssp (1.62624) |
|
jej (1.58275) |
|
nco (1.4556) |
|
ldo (1.45504) |
|
pgl (1.4218) |
|
ste (1.35208) |
|
cly (1.32706) |
|
csk (1.26671) |
|
cut (1.18946) |
|
aor (1.17165) |
|
cte (1.17096) |
|
elu (1.15607) |
|
nms (1.06929) |
|
ute (1.06228) |
|
fbs (1.05208) |
|
spc (1.02029) |
|
spl (1.00229) |
|
pty (0.999001) |
|
nbm (0.993246) |
|
cty (0.936719) |
|
nmm (0.929615) |
|
cli (0.91687) |
|
eje (0.889504) |
|
ese (0.885516) |
|
fat (0.884564) |
|
rec (0.865351) |
|
lnt (0.853849) |
|
eye (0.852515) |
|
cga (0.837287) |
|
tes (0.831255) |
|
fcc (0.791139) |
|
tbr (0.770891) |
|
sug (0.763747) |
|
lun (0.752445) |
|
sag (0.730861) |
|
hyp (0.714184) |
|
ton (0.702001) |
|
sin (0.69979) |
|
mgp (0.692042) |
|
nca (0.684369) |
|
bla (0.621736) |
|
hea (0.613497) |
|
sme (0.610874) |
|
clu (0.598229) |
|
ebs (0.591506) |
|
jca (0.569801) |
|
ova (0.516529) |
|
mcp (0.511945) |
|
thg (0.507164) |
|
eep (0.490256) |
|
mga (0.480615) |
|
eru (0.480192) |
|
eli (0.455443) |
|
bfe (0.449573) |
|
hlv (0.417769) |
|
amn (0.417711) |
|
fli (0.405762) |
|
pla (0.401016) |
|
lyg (0.399308) |
|
kid (0.389206) |
|
tra (0.369276) |
|
nep (0.36785) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
vin (0.332557) |
|
liv (0.292569) |
|
cbr (0.255951) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
mas (0.210305) |
|
col (0.195008) |
