Non-Coding RNA Search

Ss1.1-LyN1-MLN01H100023.5

Sequence:


               
               CAGGCGGAACGGTGTCTCCTTCACTTCGCCCTCCAGCCGAGGGAGCTGCAGCCCGACCCT
GAAGGAGCCGAACGGTTTCTGCTGCGAGCGAACGGCAGGGGCGCCTTCCCCTCCCCCCAG
GAGACCACCAGATCACCTCATCCGACGGCTTCGCCATGGCGTCCTATGGACAGACCTGCC
CACGGCCAATGTGTATTCCGCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGATATTT
TCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCATGCAGTG
GCGTGGAATTCTCAACATCTGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCT
TGGAGACCAAATATAAATGGTGTGAGTATGGTCTGACTTTCACAGAAAAGTGGAACACTG
ATAACACTCTGGGAACAGAAATCGCTATTGAAGACCAGATTTGTCAAGGTTTGAAACTGA
CATTTGATACCACCTTTTCACCAAACACAGGGAAGAAAAGTGGTAAAATCAAGTCTTCTT
ACAAGAGGGAGTGTGTAAACCTTGGTTGTGATGTTGACTTTGATTTTGCTGGACCTGCAA
TCCATGGTTCAGCTGTCTTTGGTTATGAGGGCTGGCTTGCTGGGTACCAGATGACCTTTG
ACAGTGCCAAATCAAAGCTGACAAGGAATAACTTTGCAGTGGGCTACAGGACTGGGGACT
TCCAGCTACACACTAATGTCAATGATGGGACAGAATTTGGAGGATCAATTTATCAGAAAG
TATGTGAAGATCTTGACACTTCAGTAAACCTTGCTTGGACATCAGGAACCAACTGCACTC
GCTTTGGCATTGCAGCTAAATATCAGTTGGATCCCACTGCTTCCATTTCTGCAAAAGTCA
ACAACTCTAGTTTAATTGGAGTGGGCTACACTCAGACCCTGAGGCCTGGTGTGAAGCTGA
CACTGTCTGCTCTGGTAGATGGGAAGAGCATTAATGCTGGAGGCCACAAACTTGGGCTTG
CCCTGGAGTTGGAGGCTTAATCCAGCTGAAAGAAACCTCTGGGAATGGATATCAGATTTG
GCCTTAATATATTTCCAGTGTGACCAGCAGGCTTCCCCACCCCCACCCCCCCAAAAAGGT
GATCAAAACAAAGGATGATCTAAACAAGAGCTGTATTTTAAATATTTAGACAGTTACTTG
TTAGCTGGTTTCTAGTTGAATTGGTTATCTATCTAGTTATCAATGCTGCAGTCGTGCAGT
CACCTATACATTATTTAAATGTATTTAACTGTTAAATGCGCTGCCCACCAATAATGAAAT
AGACCTTTATGAAAACTGTGCAGTTGGTGTGCATGTTTGTTTTTATGTTCCTTTTAACAT
TTAATATTGCCATTGAATGAGATGGATAAGTGGATATTTTAAGATGAGGTTAAAATTTTT
TGTTAAATTCAACCATCATTAGAATTACTTTTGGTATCCCCAGACATAAATTATGAATAA
AACAAGTATATATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCGGAACGGTGTCTCCTTCACTTCGCCCTCCAGCCGAGGGAGCTGCAGCCCGACCCT
GAAGGAGCCGAACGGTTTCTGCTGCGAGCGAACGGCAGGGGCGCCTTCCCCTCCCCCCAG
GAGACCACCAGATCACCTCATCCGACGGCTTCGCCATGGCGTCCTATGGACAGACCTGCC
CACGGCCAATGTGTATTCCGCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGATATTT
TCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCATGCAGTG
GCGTGGAATTCTCAACATCTGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCT
TGGAGACCAAATATAAATGGTGTGAGTATGGTCTGACTTTCACAGAAAAGTGGAACACTG
ATAACACTCTGGGAACAGAAATCGCTATTGAAGACCAGATTTGTCAAGGTTTGAAACTGA
CATTTGATACCACCTTTTCACCAAACACAGGGAAGAAAAGTGGTAAAATCAAGTCTTCTT
ACAAGAGGGAGTGTGTAAACCTTGGTTGTGATGTTGACTTTGATTTTGCTGGACCTGCAA
TCCATGGTTCAGCTGTCTTTGGTTATGAGGGCTGGCTTGCTGGGTACCAGATGACCTTTG
ACAGTGCCAAATCAAAGCTGACAAGGAATAACTTTGCAGTGGGCTACAGGACTGGGGACT
TCCAGCTACACACTAATGTCAATGATGGGACAGAATTTGGAGGATCAATTTATCAGAAAG
TATGTGAAGATCTTGACACTTCAGTAAACCTTGCTTGGACATCAGGAACCAACTGCACTC
GCTTTGGCATTGCAGCTAAATATCAGTTGGATCCCACTGCTTCCATTTCTGCAAAAGTCA
ACAACTCTAGTTTAATTGGAGTGGGCTACACTCAGACCCTGAGGCCTGGTGTGAAGCTGA
CACTGTCTGCTCTGGTAGATGGGAAGAGCATTAATGCTGGAGGCCACAAACTTGGGCTTG
CCCTGGAGTTGGAGGCTTAATCCAGCTGAAAGAAACCTCTGGGAATGGATATCAGATTTG
GCCTTAATATATTTCCAGTGTGACCAGCAGGCTTCCCCACCCCCACCCCCCCAAAAAGGT
GATCAAAACAAAGGATGATCTAAACAAGAGCTGTATTTTAAATATTTAGACAGTTACTTG
TTAGCTGGTTTCTAGTTGAATTGGTTATCTATCTAGTTATCAATGCTGCAGTCGTGCAGT
CACCTATACATTATTTAAATGTATTTAACTGTTAAATGCGCTGCCCACCAATAATGAAAT
AGACCTTTATGAAAACTGTGCAGTTGGTGTGCATGTTTGTTTTTATGTTCCTTTTAACAT
TTAATATTGCCATTGAATGAGATGGATAAGTGGATATTTTAAGATGAGGTTAAAATTTTT
TGTTAAATTCAACCATCATTAGAATTACTTTTGGTATCCCCAGACATAAATTATGAATAA
AACAAGTATATATAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9MZ15_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9MZ15_PIG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               3-131, gnl|bosTau2|chr28 (23899375-23899246)
               

               
               3-131, gnl|Hg17|chr10 (76640579-76640702)
               

               
               3-131, gnl|Mm7|chr14 (19490216-19490340)
               


               
               167-1041, gnl|bosTau2|chr10 (13353023-13352148)
               

               
               167-1041, gnl|Hg17|chr14 (99500616-99501469)
               

               
               167-1041, gnl|Mm7|chr13 (17397425-17396549)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-131, gnl|bosTau2|chr28 (23899375-23899246)
               

               
               3-131, gnl|Hg17|chr10 (76640579-76640702)
               

               
               3-131, gnl|Mm7|chr14 (19490216-19490340)
               


               
               167-1041, gnl|bosTau2|chr10 (13353023-13352148)
               

               
               167-1041, gnl|Hg17|chr14 (99500616-99501469)
               

               
               167-1041, gnl|Mm7|chr13 (17397425-17396549)

Expressed library(ies): 76 entry(ies)

More info

Expressed library(ies): 76 entry(ies)

Help | Less info


               
               hea (1.43149)
               

               
               bfe (1.34872)
               

               
               che (1.22683)
               

               
               csk (0.985222)
               

               
               nlu (0.958405)
               

               
               ssp (0.948638)
               

               
               ste (0.946458)
               

               
               tbr (0.925069)
               

               
               sin (0.874738)
               

               
               ldo (0.873024)
               

               
               hlv (0.835538)
               

               
               fce (0.814775)
               

               
               cag (0.755972)
               

               
               pgl (0.7109)
               

               
               vin (0.665115)
               

               
               fco (0.628832)
               

               
               ecc (0.575175)
               

               
               hyp (0.571347)
               

               
               nep (0.551775)
               

               
               lyg (0.532411)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               mas (0.42061)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               col (0.390016)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               tra (0.369276)
               

               
               sto (0.359648)
               

               
               med (0.348756)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 76 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.43149)
               

               
               bfe (1.34872)
               

               
               che (1.22683)
               

               
               csk (0.985222)
               

               
               nlu (0.958405)
               

               
               ssp (0.948638)
               

               
               ste (0.946458)
               

               
               tbr (0.925069)
               

               
               sin (0.874738)
               

               
               ldo (0.873024)
               

               
               hlv (0.835538)
               

               
               fce (0.814775)
               

               
               cag (0.755972)
               

               
               pgl (0.7109)
               

               
               vin (0.665115)
               

               
               fco (0.628832)
               

               
               ecc (0.575175)
               

               
               hyp (0.571347)
               

               
               nep (0.551775)
               

               
               lyg (0.532411)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               mas (0.42061)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               col (0.390016)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               tra (0.369276)
               

               
               sto (0.359648)
               

               
               med (0.348756)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	3-131, gnl\|bosTau2\|chr28 (23899375-23899246)
	3-131, gnl\|Hg17\|chr10 (76640579-76640702)
	3-131, gnl\|Mm7\|chr14 (19490216-19490340)

	167-1041, gnl\|bosTau2\|chr10 (13353023-13352148)
	167-1041, gnl\|Hg17\|chr14 (99500616-99501469)
	167-1041, gnl\|Mm7\|chr13 (17397425-17396549)

	hea (1.43149)
	bfe (1.34872)
	che (1.22683)
	csk (0.985222)
	nlu (0.958405)
	ssp (0.948638)
	ste (0.946458)
	tbr (0.925069)
	sin (0.874738)
	ldo (0.873024)
	hlv (0.835538)
	fce (0.814775)
	cag (0.755972)
	pgl (0.7109)
	vin (0.665115)
	fco (0.628832)
	ecc (0.575175)
	hyp (0.571347)
	nep (0.551775)
	lyg (0.532411)
	cbe (0.478469)
	mgp (0.461361)
	lin (0.436808)
	mas (0.42061)
	cst (0.420109)
	amn (0.417711)
	tes (0.415628)
	col (0.390016)
	ova (0.387397)
	elu (0.385356)
	bla (0.373042)
	tra (0.369276)
	sto (0.359648)
	med (0.348756)
	nje (0.33184)
	cje (0.330469)
	nco (0.323468)
	fat (0.294855)
	spl (0.286369)
	nmm (0.265604)
	ute (0.265569)
	kid (0.259471)
	ret (0.257467)
	thg (0.253582)
	eep (0.245128)
	cly (0.241284)
	ebs (0.236602)
	cbl (0.229595)
	ece (0.229305)
	spc (0.226732)
	nms (0.213858)
	cty (0.20816)
	fcc (0.197785)
	eje (0.197668)
	aor (0.195274)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	fbs (0.175346)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	csp (0.161186)
	mga (0.160205)
	isp (0.150376)
	ski (0.146735)
	pty (0.142714)
	pla (0.133672)
	cov (0.132153)
	sug (0.127291)
	ese (0.126502)
	jca (0.11396)
	jej (0.0989218)