Non-Coding RNA Search

Ss1.1-LyN1-MLN01H100049.5

Sequence:


               
               GCACGCGCGCCCGGCGGCCCGGCCTGAAGTCATCCGCGCTGCCGCAGCCGCCGCCGCCCC
CGTCGTCGTCACCACTCCCGGGTTATGGAGGGGAAGATGGAGCCGGTCACCGTCGCTACC
GACAGCGGGGACCGGCCGGGGGCCCTGGCGGGCTCAGGCCTGTCCGCTTCCCAGCGTCGG
GCCGAGCTGCGGCGGAGAAAGCTGCTCATGAACTCAGAGCAGCGCATCAATCGGATCATG
GGTTTTCACAGGCCGGGGAGCAGCGCTGAAGAAGAAAGTCAAACAAAATTAAAGCAGCAG
GACAGTGATAAACTGAACGCTCTCACCATTCCTTCGGTTTCAAAGCGAGTAGTGCTGGGT
GATTCGGTCAGTACAGGAACAGCTGACCCACAGAGTGGTGTCACCGAGGTAAAGGGGACT
CAGCTGGGAGACACATTGGACTCTTTCATGAAACCTCCTGAGTGCAGTAATGATGTAAGC
CTTGAGCTCCGACAGCGGAACAGAGGGGACCTGACAGCAGACACTGCCCAGAGGGGTTCC
CGGCATGGCCTGGAACAGTACCTCTCCAGATTTGAAGAAGCAATGAAGCTAAGAAAACAG
CTGATTAGTGAAAAGCCCAATCAAGAAGATGGAAATACAACAGAAGAATTTGACTCTTTT
CGAATATTTAGATTGGTGGGATGTGCTCTTCTTGCCTTTGGAGTCAGAGCTTTTGTTTGC
AAATATTTGTCCATATTTGCTCCATTTCTTACTTTACAACTTGCATACATGGGACTATAC
AAATATTTTCCCAAGAGTGAAAAGAAGATAAAGACAACAGTACTAACAGCGGCACTTCTA
TTATCCGGAATTCCTGCCGAAGTGATAAATCGATCAATGGATACCTATAGCAAAATGGGC
GAAGTTTTCACAGATCTGTGTGTCTACTTTTTCACTTTTATTTTTTGTCATGAACTGCTT
GATTATTGGGGCTCTGAAGTACCATGAAGGCTTCAGAACTCAGAAGGAGAAGCACATGAA
TAAACAATTTTTCTTCTATATTGCAGTGCCTCTAAAGGAGGCATATTGGTTACACCATTA
TGTAATTCTTTTACTTTTGGGGATTGTAAAACCACTTGATTAAGAATGGGATGGTAGGGT
CCCTGATTGAAAAGAGTGGAGTTTGTATTAATACCGATGTGAAGATTAGAGTACCAGTGT
CAGTAATTGATTTTTTTCTTGTTTAATTAGAATTCCTGGTGTTTGCTTTTCCCTAATTGT
AATTCCTCTTTTCTGAGCTGAGCTAGTACTTTAAGGAGAGCAGATGAATGTGTTTCAGCC
AGTCCTAAGGACTGCATTATTGTTCTGTCCTGAGAAATGGAGCTATCTTAAAATGAAAGA
AAAATAAATAAAATGAAGGAACTGAATTGCCTGATGTTAAGTCTGCACATTTTAACTTAC
TAGGGCTGAGTAAGGTAGCCAGTTTTGTCTGTTCTCATTGAGTATGTATTTTTTTACTCC
AGCACAAATTTTAATTTATGAAAAATTTTACTACCAAGCTTAGAAATTTTTACTTCTTGA
GTTTTCAGTCTTCAGAAGTGTGTTTTTTTTTAAGCCGTAGAATAGAAAGATTAGATATAA
AAATGAGATGAGAAGAATTAACATCAGAGAATCCGTATGCAACCTAATAGTGTAAATACC
TTTTAACTAACCTGGGAACACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACGCGCGCCCGGCGGCCCGGCCTGAAGTCATCCGCGCTGCCGCAGCCGCCGCCGCCCC
CGTCGTCGTCACCACTCCCGGGTTATGGAGGGGAAGATGGAGCCGGTCACCGTCGCTACC
GACAGCGGGGACCGGCCGGGGGCCCTGGCGGGCTCAGGCCTGTCCGCTTCCCAGCGTCGG
GCCGAGCTGCGGCGGAGAAAGCTGCTCATGAACTCAGAGCAGCGCATCAATCGGATCATG
GGTTTTCACAGGCCGGGGAGCAGCGCTGAAGAAGAAAGTCAAACAAAATTAAAGCAGCAG
GACAGTGATAAACTGAACGCTCTCACCATTCCTTCGGTTTCAAAGCGAGTAGTGCTGGGT
GATTCGGTCAGTACAGGAACAGCTGACCCACAGAGTGGTGTCACCGAGGTAAAGGGGACT
CAGCTGGGAGACACATTGGACTCTTTCATGAAACCTCCTGAGTGCAGTAATGATGTAAGC
CTTGAGCTCCGACAGCGGAACAGAGGGGACCTGACAGCAGACACTGCCCAGAGGGGTTCC
CGGCATGGCCTGGAACAGTACCTCTCCAGATTTGAAGAAGCAATGAAGCTAAGAAAACAG
CTGATTAGTGAAAAGCCCAATCAAGAAGATGGAAATACAACAGAAGAATTTGACTCTTTT
CGAATATTTAGATTGGTGGGATGTGCTCTTCTTGCCTTTGGAGTCAGAGCTTTTGTTTGC
AAATATTTGTCCATATTTGCTCCATTTCTTACTTTACAACTTGCATACATGGGACTATAC
AAATATTTTCCCAAGAGTGAAAAGAAGATAAAGACAACAGTACTAACAGCGGCACTTCTA
TTATCCGGAATTCCTGCCGAAGTGATAAATCGATCAATGGATACCTATAGCAAAATGGGC
GAAGTTTTCACAGATCTGTGTGTCTACTTTTTCACTTTTATTTTTTGTCATGAACTGCTT
GATTATTGGGGCTCTGAAGTACCATGAAGGCTTCAGAACTCAGAAGGAGAAGCACATGAA
TAAACAATTTTTCTTCTATATTGCAGTGCCTCTAAAGGAGGCATATTGGTTACACCATTA
TGTAATTCTTTTACTTTTGGGGATTGTAAAACCACTTGATTAAGAATGGGATGGTAGGGT
CCCTGATTGAAAAGAGTGGAGTTTGTATTAATACCGATGTGAAGATTAGAGTACCAGTGT
CAGTAATTGATTTTTTTCTTGTTTAATTAGAATTCCTGGTGTTTGCTTTTCCCTAATTGT
AATTCCTCTTTTCTGAGCTGAGCTAGTACTTTAAGGAGAGCAGATGAATGTGTTTCAGCC
AGTCCTAAGGACTGCATTATTGTTCTGTCCTGAGAAATGGAGCTATCTTAAAATGAAAGA
AAAATAAATAAAATGAAGGAACTGAATTGCCTGATGTTAAGTCTGCACATTTTAACTTAC
TAGGGCTGAGTAAGGTAGCCAGTTTTGTCTGTTCTCATTGAGTATGTATTTTTTTACTCC
AGCACAAATTTTAATTTATGAAAAATTTTACTACCAAGCTTAGAAATTTTTACTTCTTGA
GTTTTCAGTCTTCAGAAGTGTGTTTTTTTTTAAGCCGTAGAATAGAAAGATTAGATATAA
AAATGAGATGAGAAGAATTAACATCAGAGAATCCGTATGCAACCTAATAGTGTAAATACC
TTTTAACTAACCTGGGAACACTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|39794057|gb|AAH64104.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39794057|gb|AAH64104.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-266, gnl|bosTau2|chr7 (32402716-32402466)
               

               
               1-266, gnl|Hg17|chr5 (134102114-134102379)
               

               
               1-266, gnl|Mm7|chr13 (54710928-54711165)
               


               
               268-729, gnl|bosTau2|chr7 (32400965-32400507)
               

               
               268-729, gnl|Hg17|chr5 (134104651-134105112)
               

               
               268-729, gnl|Mm7|chr13 (54712621-54713082)
               


               
               794-1523, gnl|bosTau2|chr7 (32395590-32394874)
               

               
               794-1523, gnl|Hg17|chr5 (134114346-134115054)
               

               
               794-1523, gnl|Mm7|chr13 (54719718-54720435)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-266, gnl|bosTau2|chr7 (32402716-32402466)
               

               
               1-266, gnl|Hg17|chr5 (134102114-134102379)
               

               
               1-266, gnl|Mm7|chr13 (54710928-54711165)
               


               
               268-729, gnl|bosTau2|chr7 (32400965-32400507)
               

               
               268-729, gnl|Hg17|chr5 (134104651-134105112)
               

               
               268-729, gnl|Mm7|chr13 (54712621-54713082)
               


               
               794-1523, gnl|bosTau2|chr7 (32395590-32394874)
               

               
               794-1523, gnl|Hg17|chr5 (134114346-134115054)
               

               
               794-1523, gnl|Mm7|chr13 (54719718-54720435)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               tbr (0.308356)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	1-266, gnl\|bosTau2\|chr7 (32402716-32402466)
	1-266, gnl\|Hg17\|chr5 (134102114-134102379)
	1-266, gnl\|Mm7\|chr13 (54710928-54711165)

	268-729, gnl\|bosTau2\|chr7 (32400965-32400507)
	268-729, gnl\|Hg17\|chr5 (134104651-134105112)
	268-729, gnl\|Mm7\|chr13 (54712621-54713082)

	794-1523, gnl\|bosTau2\|chr7 (32395590-32394874)
	794-1523, gnl\|Hg17\|chr5 (134114346-134115054)
	794-1523, gnl\|Mm7\|chr13 (54719718-54720435)

	tbr (0.308356)
	mgp (0.230681)
	hea (0.204499)
	aor (0.195274)
	sto (0.179824)
	gul (0.177588)
	cje (0.165235)
	ski (0.146735)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)