Non-Coding RNA Search

Ss1.1-LyN1-MLN01H100096.5

Sequence:


               
               TTTTTGTTGCTTCACACCCTTTATCGTCCTTGCTTCAAACAACCCTGCTAGGTGGGCTAG
TCAGGATTTCTAAACTCGACATTACAGATTAGTCAACTGGAGATCCTGAAAAAGGCCTGC
CCAAGGTCACAAAGGAAGCTGGACACAGAGGCAGAAGGGGTGCAAGGGAAGCGAGGGCCT
GTTGAGGGTGTGCTAAGACGAGTTTGGAGAAGAGTTTGTCTTCTCACCGTGTACTGTACC
ATTGTGCCTGGTCACACAGGTGCTCCCAGCTTGGAATGCATGTGTGGGATGGGGAGGCTT
GTGGTGGAGGCATGTCTCATAAAGTCTCTCTTCTCATTTTGGCCTCCCCAGGTTTCCTGG
GGCCCCTACTCCGGGGACTATGAAGAGGCATATTCTGCTGAACCGTTGCCAGAGCTCTGC
CACAAGGCTGATGTCCAGGCCTTCAGTCGGGCCTTCCAACCCAGTGTCTCTTTGACCGTG
GCTGCTCTGGGTCTGGCGGGCAATGGCCTGGTCCTGGCCACCCATCTGGCGGCCCGTCGC
GCTGCCCGCTCGCCTACCTCCGCCCACCTGCTCCAGCTGGCCCTGGCCGACCTCCTGCTG
GCTCTGACTCTGCCCTTTGCTGCAGCCGGGGCTCTGCAGGGCTGGAGTCTGGGAAGTGTC
ACCTGCCGCGCCATTTCGGGCCTCTACTCGGCCTCCTTCCACGCCGGCTTCCTCTTCCTG
GCCTGTATCAGCGCCGACCGCTACGTGGCCATCGCGCGAGCCCTCCCAGCTGGACCGAGA
CCCTCCGCGCCGGGCCGCGCACACTTGGTCTCCGTCGTCGTGTGGCTGTTATCGCTGCTC
CTGGCGCTGCCTGCTCTCCTTTTCAGCCAGGACGGCCAGCGGGAAGGCCAGCGGCGCTGC
CGTCTCATCTTCCCCGAGGGCCTCACGCAGACGGTGAAGGGGGCGAGCGCCGTAGCGCAG
GTGGTCCTGGGCTTCGCGCTGCCGCTGGGCGTCATGGCGGCCTGCTACGCGCTCCTGGGC
CGCACGCTGCTGGCCACCAGGGGGCCGGAGCGCCGGCGCGCGCTGCGCGTCGTGGTAGCC
CTGGTGGCGGCGTTTGTGATACTGCAGCTGCCCTACAGTCTCGCCCTGCTGTTGGATACT
GCTGACCTACTGGCGGCCCGCGAGCGGAGCTGTCCTGCCAGCAAGCGCAAGGATCTGGCA
CTGCTGGTGACCGGAGGCTTGGCCCTCGCCCGCTGCGGCCTCAACCCAGTGCTCTACGCT
TTTCTGGGCCTGCGCTTCCGCCAGGACCTGCGGAGGCTGCTTCGGAGTGGGGGCTGCAGT
CCAGGGCCTCACCCCCGCGGCCGCTGCCCCCGCCGGCCCCGCCTTTCTTCCTGTTCGGCT
CCCACTGAGACCAACAGTGTCTCCTTCTGGGATCACTAGAGCTGCGAATCAAGAGAAGGG
GGAGGGCTGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGTTGCTTCACACCCTTTATCGTCCTTGCTTCAAACAACCCTGCTAGGTGGGCTAG
TCAGGATTTCTAAACTCGACATTACAGATTAGTCAACTGGAGATCCTGAAAAAGGCCTGC
CCAAGGTCACAAAGGAAGCTGGACACAGAGGCAGAAGGGGTGCAAGGGAAGCGAGGGCCT
GTTGAGGGTGTGCTAAGACGAGTTTGGAGAAGAGTTTGTCTTCTCACCGTGTACTGTACC
ATTGTGCCTGGTCACACAGGTGCTCCCAGCTTGGAATGCATGTGTGGGATGGGGAGGCTT
GTGGTGGAGGCATGTCTCATAAAGTCTCTCTTCTCATTTTGGCCTCCCCAGGTTTCCTGG
GGCCCCTACTCCGGGGACTATGAAGAGGCATATTCTGCTGAACCGTTGCCAGAGCTCTGC
CACAAGGCTGATGTCCAGGCCTTCAGTCGGGCCTTCCAACCCAGTGTCTCTTTGACCGTG
GCTGCTCTGGGTCTGGCGGGCAATGGCCTGGTCCTGGCCACCCATCTGGCGGCCCGTCGC
GCTGCCCGCTCGCCTACCTCCGCCCACCTGCTCCAGCTGGCCCTGGCCGACCTCCTGCTG
GCTCTGACTCTGCCCTTTGCTGCAGCCGGGGCTCTGCAGGGCTGGAGTCTGGGAAGTGTC
ACCTGCCGCGCCATTTCGGGCCTCTACTCGGCCTCCTTCCACGCCGGCTTCCTCTTCCTG
GCCTGTATCAGCGCCGACCGCTACGTGGCCATCGCGCGAGCCCTCCCAGCTGGACCGAGA
CCCTCCGCGCCGGGCCGCGCACACTTGGTCTCCGTCGTCGTGTGGCTGTTATCGCTGCTC
CTGGCGCTGCCTGCTCTCCTTTTCAGCCAGGACGGCCAGCGGGAAGGCCAGCGGCGCTGC
CGTCTCATCTTCCCCGAGGGCCTCACGCAGACGGTGAAGGGGGCGAGCGCCGTAGCGCAG
GTGGTCCTGGGCTTCGCGCTGCCGCTGGGCGTCATGGCGGCCTGCTACGCGCTCCTGGGC
CGCACGCTGCTGGCCACCAGGGGGCCGGAGCGCCGGCGCGCGCTGCGCGTCGTGGTAGCC
CTGGTGGCGGCGTTTGTGATACTGCAGCTGCCCTACAGTCTCGCCCTGCTGTTGGATACT
GCTGACCTACTGGCGGCCCGCGAGCGGAGCTGTCCTGCCAGCAAGCGCAAGGATCTGGCA
CTGCTGGTGACCGGAGGCTTGGCCCTCGCCCGCTGCGGCCTCAACCCAGTGCTCTACGCT
TTTCTGGGCCTGCGCTTCCGCCAGGACCTGCGGAGGCTGCTTCGGAGTGGGGGCTGCAGT
CCAGGGCCTCACCCCCGCGGCCGCTGCCCCCGCCGGCCCCGCCTTTCTTCCTGTTCGGCT
CCCACTGAGACCAACAGTGTCTCCTTCTGGGATCACTAGAGCTGCGAATCAAGAGAAGGG
GGAGGGCTGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CCR10_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CCR10_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               252-371, - strand, RNAz p=0.888463
               

               
               412-611, - strand, RNAz p=0.837088
               

               
               1212-1331, - strand, RNAz p=0.87536

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               252-371, - strand, RNAz p=0.888463
               

               
               412-611, - strand, RNAz p=0.837088
               

               
               1212-1331, - strand, RNAz p=0.87536

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               27-1452, gnl|bosTau2|chr19 (39028721-39030161)
               

               
               27-1452, gnl|Hg17|chr17 (38086480-38085064)
               

               
               27-1452, gnl|Mm7|chr11 (101284044-101282620)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-1452, gnl|bosTau2|chr19 (39028721-39030161)
               

               
               27-1452, gnl|Hg17|chr17 (38086480-38085064)
               

               
               27-1452, gnl|Mm7|chr11 (101284044-101282620)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	252-371, - strand, RNAz p=0.888463
	412-611, - strand, RNAz p=0.837088
	1212-1331, - strand, RNAz p=0.87536

	27-1452, gnl\|bosTau2\|chr19 (39028721-39030161)
	27-1452, gnl\|Hg17\|chr17 (38086480-38085064)
	27-1452, gnl\|Mm7\|chr11 (101284044-101282620)