Ss1.1-LyN1-MLN01H110045.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGAGGTGGTGCTCGCGCGAGGAGAGTCGGCTCTCGGCACTTGACATGGCGGCAGCGGC GGTGACTGCAGCGACGAAAGGGAATGGGGCCGGCGGGGGCCGGGCCGGGGCCGGCGAAGC CAGCGGCTCACGGAAGAAGAAGGGCCCGGGGCCTCTGGCCACGGCGTATCTGGTCATCTA CAATGTGGTGATGACCGCGGGGTGGCTCGTTATAGCAGTTGGCCTGGTCAGAGCATACCT GGCTAAGGGTAGCTATCATAGCCTTTATTATTCCATTGAAAAGCCTTTGAAATTCTTCCA AACTGGAGCCTTGTTGGAGATTTTACATTGTGCAATAGGAATTGTTCCATCTTCTGTTGT CCTGACTTCTTTCCAGGTGATGTCAAGAGTTTTTCTAATCTGGGCAGTAACACATAGCGT CAAAGAGGTACAGAGTGAAGACAGTGTCCTCCTGTTTGTTGTTGCCTGGACAATCACAGA AATTATCCGTTACTCCTTTTATACATTCAGTCTTTTAAACCATCTGCCTTACCTCATCAA ATGGGCCAGGTACACACTTTTCATTGTGCTGTACCCAATGGGAGTGTCGGGAGAGTTGCT CACAGTATATGCTGCTCTGCCCTTTGTCAGACAGGCTGGCCTGTACTCCATCAGTTTGCC AAACAAATACAATTTCTCCTTTGACTATTACACATTCCTGATTCTGATGATGATCTCCTA CATTCCAATTTTCCCCCAGTTATACTTCCACATGATACACCAGAGAAGAAAGGTCCTTTC TCATACCGAAGAACACAAGAAATTTGAGTAGCTCTTGCTTCCTGCACCACCACCCCAGCA ACAAACTTTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGAGGTGGTGCTCGCGCGAGGAGAGTCGGCTCTCGGCACTTGACATGGCGGCAGCGGC GGTGACTGCAGCGACGAAAGGGAATGGGGCCGGCGGGGGCCGGGCCGGGGCCGGCGAAGC CAGCGGCTCACGGAAGAAGAAGGGCCCGGGGCCTCTGGCCACGGCGTATCTGGTCATCTA CAATGTGGTGATGACCGCGGGGTGGCTCGTTATAGCAGTTGGCCTGGTCAGAGCATACCT GGCTAAGGGTAGCTATCATAGCCTTTATTATTCCATTGAAAAGCCTTTGAAATTCTTCCA AACTGGAGCCTTGTTGGAGATTTTACATTGTGCAATAGGAATTGTTCCATCTTCTGTTGT CCTGACTTCTTTCCAGGTGATGTCAAGAGTTTTTCTAATCTGGGCAGTAACACATAGCGT CAAAGAGGTACAGAGTGAAGACAGTGTCCTCCTGTTTGTTGTTGCCTGGACAATCACAGA AATTATCCGTTACTCCTTTTATACATTCAGTCTTTTAAACCATCTGCCTTACCTCATCAA ATGGGCCAGGTACACACTTTTCATTGTGCTGTACCCAATGGGAGTGTCGGGAGAGTTGCT CACAGTATATGCTGCTCTGCCCTTTGTCAGACAGGCTGGCCTGTACTCCATCAGTTTGCC AAACAAATACAATTTCTCCTTTGACTATTACACATTCCTGATTCTGATGATGATCTCCTA CATTCCAATTTTCCCCCAGTTATACTTCCACATGATACACCAGAGAAGAAAGGTCCTTTC TCATACCGAAGAACACAAGAAATTTGAGTAGCTCTTGCTTCCTGCACCACCACCCCAGCA ACAAACTTTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 548-706, - strand, RNAz p=0.937381 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 548-706, - strand, RNAz p=0.937381 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 3-204, gnl|bosTau2|chr1 (41714210-41714411) | |
| 3-204, gnl|Hg17|chr3 (124786608-124786407) | |
| 3-204, gnl|Mm7|chr16 (34697204-34697406) | |
| 548-727, gnl|bosTau2|chr1 (41833793-41833972) | |
| 548-727, gnl|canFam2|chr33 (29580741-29580883) | |
| 548-727, gnl|danRer3|chrUn (99402447-99402588) | |
| 548-727, gnl|dasNov1|scaffold_13292 (81331-81189) | |
| 548-727, gnl|echTel1|scaffold_232478 (7507-7648) | |
| 548-727, gnl|fr1|chrUn (158707598-158707450) | |
| 548-727, gnl|galGal2|chr7 (27846001-27846142) | |
| 548-727, gnl|hg17|chr3 (124702035-124702176) | |
| 548-727, gnl|Hg17|chr3 (124702232-124702053) | |
| 548-727, gnl|loxAfr1|scaffold_3598 (12947-13090) | |
| 548-727, gnl|mm7|chr16 (34776900-34776770) | |
| 548-727, gnl|Mm7|chr16 (34776712-34776891) | |
| 548-727, gnl|monDom2|scaffold_24 (21651305-21651446) | |
| 548-727, gnl|oryCun1|scaffold_182397 (51876-52006) | |
| 548-727, gnl|panTro1|chr2 (126402911-126403052) | |
| 548-727, gnl|rheMac2|chr2 (43492309-43492450) | |
| 548-727, gnl|rn3|chr11 (67551876-67552006) | |
| 548-727, gnl|tetNig1|chr2 (18064189-18064061) | |
| 548-727, gnl|xenTro1|scaffold_2236 (37806-37943) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-204, gnl|bosTau2|chr1 (41714210-41714411) | |
| 3-204, gnl|Hg17|chr3 (124786608-124786407) | |
| 3-204, gnl|Mm7|chr16 (34697204-34697406) | |
| 548-727, gnl|bosTau2|chr1 (41833793-41833972) | |
| 548-727, gnl|canFam2|chr33 (29580741-29580883) | |
| 548-727, gnl|danRer3|chrUn (99402447-99402588) | |
| 548-727, gnl|dasNov1|scaffold_13292 (81331-81189) | |
| 548-727, gnl|echTel1|scaffold_232478 (7507-7648) | |
| 548-727, gnl|fr1|chrUn (158707598-158707450) | |
| 548-727, gnl|galGal2|chr7 (27846001-27846142) | |
| 548-727, gnl|hg17|chr3 (124702035-124702176) | |
| 548-727, gnl|Hg17|chr3 (124702232-124702053) | |
| 548-727, gnl|loxAfr1|scaffold_3598 (12947-13090) | |
| 548-727, gnl|mm7|chr16 (34776900-34776770) | |
| 548-727, gnl|Mm7|chr16 (34776712-34776891) | |
| 548-727, gnl|monDom2|scaffold_24 (21651305-21651446) | |
| 548-727, gnl|oryCun1|scaffold_182397 (51876-52006) | |
| 548-727, gnl|panTro1|chr2 (126402911-126403052) | |
| 548-727, gnl|rheMac2|chr2 (43492309-43492450) | |
| 548-727, gnl|rn3|chr11 (67551876-67552006) | |
| 548-727, gnl|tetNig1|chr2 (18064189-18064061) | |
| 548-727, gnl|xenTro1|scaffold_2236 (37806-37943) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| mcp (0.341297) | |
| tes (0.207814) | |
| nep (0.183925) | |
| cli (0.152812) | |
| fat (0.147427) | |
| ski (0.146735) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.341297) | |
| tes (0.207814) | |
| nep (0.183925) | |
| cli (0.152812) | |
| fat (0.147427) | |
| ski (0.146735) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) |