Ss1.1-LyN1-MLN01H120014.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTGACCCTGCACTGCGGCCTCAACGAGCACAACCACCACCTCATCAACGACTTCACCG TCAAGCAGATGAGACAAGGGGCCTTCCTGGTGAACACGGCCCGGGGCGGCCTGGTGGACG AGAAGGCGCTGGCCCAGGCGCTGAAGGAGGGGCGGATCCGCGGCGCGGCCCTGGACGTGC ACGAGTCGGAGCCCTTCAGCTTTAGCCAGGGCCCCCTGAAGGACGCTCCCAACCTGATCT GCACCCCGCACGCAGCCTGGTACAGCGAGCAGGCCTCCATCGAGATGCGGGAGGAGGCGG CCCGCGAGATCCGGAGAGCCATCACAGGCCGGATCCCTGACAGCCTGAAGAACTGTGTGA ACAAGGACCACCTGGCAGCAGCCACCCACTGGGCCAGCGTGGACCCAGCCGTGGTGCACC CCGAGCTCAACGGGGCCGCCTACAGCAGGTACCCCCCGGGCGTGGTAGGCGTGGCCCCCA GTGGCATCCCAGCCGCAGTCGAAGGCATTGTCCCCAGCGCCATGTCCCTGTCCCACGGCC TGCCCCCTGTATCCCACCCGCCCCACGCGCCTTCTCCAGGCCAAACCGTCAAGCCCGAGG CGGATAGAGACCACGCAAGCGACCAGTTGTAACCCGGGCAGAGCTCCGAAGCCTCGCCGC CGCCGCAAGCGCCGAAGGGGCCGCGCCCTCGGACAGGCGTGTGCAGGGGCAGCGCCGACG GGCGGCCGCGGCCTCCAGAGATGGCCCGGGCTCCAGGTGGTGAGAGGTGGCGCCGGCCTC CTCGCGTCACTGTAGTTGTCCCGTCCCGAGGGCCAGCCGCTGCCCTGTGTCCTTCGCGTC CTTGTTAAGCAAAAGCAGTTCGTAGTTAATTCCGTCATGAATGTTCCCGTCTGTGCACAG TCTCTAGAACATTACAAGGATTTGTTTGCTTAGCTGTCGGCAGAGACGCCCGCGGGAGCG CCGGCGTCCGCCCAGGCCGCCCCGTGAGTGCCGCGCGCCCCGGACCAGGCAGTTGGCAAA CTTCTCAGGACAATGAATCCCTCCGGTTTTCTTTTTACGCCACACAGTGCATTGTTTTTT CTACCTGCTTGTCTTATTTTTAGGATAATTTAGAAAAGCAACACCCAGGCTGTCTTTCCT AATTTTGGCATGAACCCCCTTGTTCCAAACGAAGGCGGCGCCGCCAGGCGGGCAGAGCGT GCGCCTCTGCCCCGGGGGCCAGGGCCCCGCGCCCGCCGAGCGGAGCCGTCCTGCTGATGT GGTAGGCTAGCAATATTTTGGTTAAAATCATGTTTGTGACTGTAACCATTTGTATGAATT ATTTTAAAGAAATAAAAATCCCAGAAAGAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTGACCCTGCACTGCGGCCTCAACGAGCACAACCACCACCTCATCAACGACTTCACCG TCAAGCAGATGAGACAAGGGGCCTTCCTGGTGAACACGGCCCGGGGCGGCCTGGTGGACG AGAAGGCGCTGGCCCAGGCGCTGAAGGAGGGGCGGATCCGCGGCGCGGCCCTGGACGTGC ACGAGTCGGAGCCCTTCAGCTTTAGCCAGGGCCCCCTGAAGGACGCTCCCAACCTGATCT GCACCCCGCACGCAGCCTGGTACAGCGAGCAGGCCTCCATCGAGATGCGGGAGGAGGCGG CCCGCGAGATCCGGAGAGCCATCACAGGCCGGATCCCTGACAGCCTGAAGAACTGTGTGA ACAAGGACCACCTGGCAGCAGCCACCCACTGGGCCAGCGTGGACCCAGCCGTGGTGCACC CCGAGCTCAACGGGGCCGCCTACAGCAGGTACCCCCCGGGCGTGGTAGGCGTGGCCCCCA GTGGCATCCCAGCCGCAGTCGAAGGCATTGTCCCCAGCGCCATGTCCCTGTCCCACGGCC TGCCCCCTGTATCCCACCCGCCCCACGCGCCTTCTCCAGGCCAAACCGTCAAGCCCGAGG CGGATAGAGACCACGCAAGCGACCAGTTGTAACCCGGGCAGAGCTCCGAAGCCTCGCCGC CGCCGCAAGCGCCGAAGGGGCCGCGCCCTCGGACAGGCGTGTGCAGGGGCAGCGCCGACG GGCGGCCGCGGCCTCCAGAGATGGCCCGGGCTCCAGGTGGTGAGAGGTGGCGCCGGCCTC CTCGCGTCACTGTAGTTGTCCCGTCCCGAGGGCCAGCCGCTGCCCTGTGTCCTTCGCGTC CTTGTTAAGCAAAAGCAGTTCGTAGTTAATTCCGTCATGAATGTTCCCGTCTGTGCACAG TCTCTAGAACATTACAAGGATTTGTTTGCTTAGCTGTCGGCAGAGACGCCCGCGGGAGCG CCGGCGTCCGCCCAGGCCGCCCCGTGAGTGCCGCGCGCCCCGGACCAGGCAGTTGGCAAA CTTCTCAGGACAATGAATCCCTCCGGTTTTCTTTTTACGCCACACAGTGCATTGTTTTTT CTACCTGCTTGTCTTATTTTTAGGATAATTTAGAAAAGCAACACCCAGGCTGTCTTTCCT AATTTTGGCATGAACCCCCTTGTTCCAAACGAAGGCGGCGCCGCCAGGCGGGCAGAGCGT GCGCCTCTGCCCCGGGGGCCAGGGCCCCGCGCCCGCCGAGCGGAGCCGTCCTGCTGATGT GGTAGGCTAGCAATATTTTGGTTAAAATCATGTTTGTGACTGTAACCATTTGTATGAATT ATTTTAAAGAAATAAAAATCCCAGAAAGAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1027-1145, - strand, RNAz p=0.506349 | |
| 1224-1336, - strand, RNAz p=0.513645 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1027-1145, - strand, RNAz p=0.506349 | |
| 1224-1336, - strand, RNAz p=0.513645 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 67-202, gnl|bosTau2|chr26 (31156131-31155996) | |
| 67-202, gnl|canFam2|chr28 (37265461-37265547) | |
| 67-202, gnl|canFam2|chr28 (37265461-37265547) | |
| 67-202, gnl|canFam2|chr28 (37265455-37265544) | |
| 67-202, gnl|danRer3|chrNA (15262604-15262515) | |
| 67-202, gnl|danRer3|chrNA (15262604-15262515) | |
| 67-202, gnl|danRer3|chrNA (15262606-15262508) | |
| 67-202, gnl|dasNov1|scaffold_116847 (402-313) | |
| 67-202, gnl|dasNov1|scaffold_25821 (1339-1253) | |
| 67-202, gnl|dasNov1|scaffold_25821 (1345-1256) | |
| 67-202, gnl|fr1|chrUn (25562691-25562780) | |
| 67-202, gnl|fr1|chrUn (25562691-25562780) | |
| 67-202, gnl|fr1|chrUn (25562689-25562787) | |
| 67-202, gnl|galGal2|chr6 (31430198-31430284) | |
| 67-202, gnl|galGal2|chr6 (31430198-31430284) | |
| 67-202, gnl|galGal2|chrUn (130665662-130665576) | |
| 67-202, gnl|hg17|chr1 (68339889-68339978) | |
| 67-202, gnl|hg17|chr10 (96396823-96396923) | |
| 67-202, gnl|Hg17|chr10 (126672546-126672411) | |
| 67-202, gnl|hg17|chr2 (49054479-49054567) | |
| 67-202, gnl|loxAfr1|scaffold_5324 (53202-53288) | |
| 67-202, gnl|loxAfr1|scaffold_5324 (53202-53288) | |
| 67-202, gnl|loxAfr1|scaffold_5324 (53196-53285) | |
| 67-202, gnl|mm7|chr7 (129395940-129396026) | |
| 67-202, gnl|mm7|chr7 (129395940-129396026) | |
| 67-202, gnl|mm7|chr7 (129395934-129396023) | |
| 67-202, gnl|Mm7|chr7 (129396065-129395931) | |
| 67-202, gnl|monDom2|scaffold_144 (330259-330342) | |
| 67-202, gnl|monDom2|scaffold_144 (330426-330515) | |
| 67-202, gnl|monDom2|scaffold_26 (33147018-33147103) | |
| 67-202, gnl|oryCun1|scaffold_181697 (30690-30779) | |
| 67-202, gnl|oryCun1|scaffold_181697 (30690-30779) | |
| 67-202, gnl|oryCun1|scaffold_181697 (30687-30776) | |
| 67-202, gnl|panTro1|chr1 (66901097-66901186) | |
| 67-202, gnl|panTro1|chr1 (66901094-66901183) | |
| 67-202, gnl|panTro1|chr12 (51126379-51126467) | |
| 67-202, gnl|rheMac2|chr1 (70954052-70954141) | |
| 67-202, gnl|rheMac2|chr1 (70954049-70954138) | |
| 67-202, gnl|rheMac2|chr13 (49078047-49078135) | |
| 67-202, gnl|rn3|chr19 (646407-646496) | |
| 67-202, gnl|rn3|chr19 (646407-646496) | |
| 67-202, gnl|rn3|chr19 (646404-646493) | |
| 67-202, gnl|tetNig1|chr2_random (1753806-1753895) | |
| 67-202, gnl|tetNig1|chr2_random (1753806-1753895) | |
| 67-202, gnl|tetNig1|chr2_random (1753804-1753902) | |
| 67-202, gnl|xenTro1|scaffold_230 (1190250-1190336) | |
| 67-202, gnl|xenTro1|scaffold_97 (1595030-1595116) | |
| 67-202, gnl|xenTro1|scaffold_97 (1595025-1595113) | |
| 322-445, gnl|bosTau2|chr6 (64751709-64751832) | |
| 322-445, gnl|canFam2|chr3 (94232205-94232056) | |
| 322-445, gnl|danRer3|chr14 (17041923-17041786) | |
| 322-445, gnl|dasNov1|scaffold_25821 (2610-2484) | |
| 322-445, gnl|fr1|chrUn (32982614-32982753) | |
| 322-445, gnl|galGal2|chr4 (84885347-84885199) | |
| 322-445, gnl|hg17|chr4 (1196525-1196672) | |
| 322-445, gnl|Hg17|chr4 (1196654-1196531) | |
| 322-445, gnl|loxAfr1|scaffold_5324 (51950-52075) | |
| 322-445, gnl|mm7|chr5 (32311847-32312002) | |
| 322-445, gnl|Mm7|chr5 (32311976-32311853) | |
| 322-445, gnl|monDom2|scaffold_10 (46508283-46508138) | |
| 322-445, gnl|oryCun1|scaffold_181697 (30444-30556) | |
| 322-445, gnl|panTro1|chr3 (1283256-1283403) | |
| 322-445, gnl|rheMac2|chr1 (2753519-2753372) | |
| 322-445, gnl|rn3|chr14 (83026564-83026719) | |
| 322-445, gnl|tetNig1|chr1 (5750294-5750415) | |
| 322-445, gnl|xenTro1|scaffold_149 (1885541-1885673) | |
| 764-1349, gnl|bosTau2|chr6 (64752085-64752668) | |
| 764-1349, gnl|Hg17|chr4 (1195989-1195067) | |
| 764-1349, gnl|Mm7|chr5 (32311377-32310476) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-202, gnl|bosTau2|chr26 (31156131-31155996) | |
| 67-202, gnl|canFam2|chr28 (37265461-37265547) | |
| 67-202, gnl|canFam2|chr28 (37265461-37265547) | |
| 67-202, gnl|canFam2|chr28 (37265455-37265544) | |
| 67-202, gnl|danRer3|chrNA (15262604-15262515) | |
| 67-202, gnl|danRer3|chrNA (15262604-15262515) | |
| 67-202, gnl|danRer3|chrNA (15262606-15262508) | |
| 67-202, gnl|dasNov1|scaffold_116847 (402-313) | |
| 67-202, gnl|dasNov1|scaffold_25821 (1339-1253) | |
| 67-202, gnl|dasNov1|scaffold_25821 (1345-1256) | |
| 67-202, gnl|fr1|chrUn (25562691-25562780) | |
| 67-202, gnl|fr1|chrUn (25562691-25562780) | |
| 67-202, gnl|fr1|chrUn (25562689-25562787) | |
| 67-202, gnl|galGal2|chr6 (31430198-31430284) | |
| 67-202, gnl|galGal2|chr6 (31430198-31430284) | |
| 67-202, gnl|galGal2|chrUn (130665662-130665576) | |
| 67-202, gnl|hg17|chr1 (68339889-68339978) | |
| 67-202, gnl|hg17|chr10 (96396823-96396923) | |
| 67-202, gnl|Hg17|chr10 (126672546-126672411) | |
| 67-202, gnl|hg17|chr2 (49054479-49054567) | |
| 67-202, gnl|loxAfr1|scaffold_5324 (53202-53288) | |
| 67-202, gnl|loxAfr1|scaffold_5324 (53202-53288) | |
| 67-202, gnl|loxAfr1|scaffold_5324 (53196-53285) | |
| 67-202, gnl|mm7|chr7 (129395940-129396026) | |
| 67-202, gnl|mm7|chr7 (129395940-129396026) | |
| 67-202, gnl|mm7|chr7 (129395934-129396023) | |
| 67-202, gnl|Mm7|chr7 (129396065-129395931) | |
| 67-202, gnl|monDom2|scaffold_144 (330259-330342) | |
| 67-202, gnl|monDom2|scaffold_144 (330426-330515) | |
| 67-202, gnl|monDom2|scaffold_26 (33147018-33147103) | |
| 67-202, gnl|oryCun1|scaffold_181697 (30690-30779) | |
| 67-202, gnl|oryCun1|scaffold_181697 (30690-30779) | |
| 67-202, gnl|oryCun1|scaffold_181697 (30687-30776) | |
| 67-202, gnl|panTro1|chr1 (66901097-66901186) | |
| 67-202, gnl|panTro1|chr1 (66901094-66901183) | |
| 67-202, gnl|panTro1|chr12 (51126379-51126467) | |
| 67-202, gnl|rheMac2|chr1 (70954052-70954141) | |
| 67-202, gnl|rheMac2|chr1 (70954049-70954138) | |
| 67-202, gnl|rheMac2|chr13 (49078047-49078135) | |
| 67-202, gnl|rn3|chr19 (646407-646496) | |
| 67-202, gnl|rn3|chr19 (646407-646496) | |
| 67-202, gnl|rn3|chr19 (646404-646493) | |
| 67-202, gnl|tetNig1|chr2_random (1753806-1753895) | |
| 67-202, gnl|tetNig1|chr2_random (1753806-1753895) | |
| 67-202, gnl|tetNig1|chr2_random (1753804-1753902) | |
| 67-202, gnl|xenTro1|scaffold_230 (1190250-1190336) | |
| 67-202, gnl|xenTro1|scaffold_97 (1595030-1595116) | |
| 67-202, gnl|xenTro1|scaffold_97 (1595025-1595113) | |
| 322-445, gnl|bosTau2|chr6 (64751709-64751832) | |
| 322-445, gnl|canFam2|chr3 (94232205-94232056) | |
| 322-445, gnl|danRer3|chr14 (17041923-17041786) | |
| 322-445, gnl|dasNov1|scaffold_25821 (2610-2484) | |
| 322-445, gnl|fr1|chrUn (32982614-32982753) | |
| 322-445, gnl|galGal2|chr4 (84885347-84885199) | |
| 322-445, gnl|hg17|chr4 (1196525-1196672) | |
| 322-445, gnl|Hg17|chr4 (1196654-1196531) | |
| 322-445, gnl|loxAfr1|scaffold_5324 (51950-52075) | |
| 322-445, gnl|mm7|chr5 (32311847-32312002) | |
| 322-445, gnl|Mm7|chr5 (32311976-32311853) | |
| 322-445, gnl|monDom2|scaffold_10 (46508283-46508138) | |
| 322-445, gnl|oryCun1|scaffold_181697 (30444-30556) | |
| 322-445, gnl|panTro1|chr3 (1283256-1283403) | |
| 322-445, gnl|rheMac2|chr1 (2753519-2753372) | |
| 322-445, gnl|rn3|chr14 (83026564-83026719) | |
| 322-445, gnl|tetNig1|chr1 (5750294-5750415) | |
| 322-445, gnl|xenTro1|scaffold_149 (1885541-1885673) | |
| 764-1349, gnl|bosTau2|chr6 (64752085-64752668) | |
| 764-1349, gnl|Hg17|chr4 (1195989-1195067) | |
| 764-1349, gnl|Mm7|chr5 (32311377-32310476) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| pla (2.00508) | |
| fcc (0.39557) | |
| fty (0.351679) | |
| ese (0.253004) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cag (0.151194) | |
| isp (0.150376) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| sug (0.127291) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (2.00508) | |
| fcc (0.39557) | |
| fty (0.351679) | |
| ese (0.253004) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cag (0.151194) | |
| isp (0.150376) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| sug (0.127291) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| nbm (0.0993246) |