Non-Coding RNA Search

Ss1.1-LyN1-MLN01H120024.5

Sequence:


               
               TTTTTTTTTTTTTTTTCATATTAATCATAATTTTTTAATTAACAAGTAGTGAATAGGACA
CTTTAAGATATTGTTTACTACATACTGAAATAAACAGATCCGTTGTAAATTCAGAAACCC
AAACATTTACAGTAAAATGTGCTTACACATAAATATGACCAAATTCATTTAAAGCCCCTG
ATAGGTCCTAAGTACATGCAATACCATGTAAAAACAAGACCATGACGCTGATGTAAAAAA
TGACAAAATCACTAAGTCACCAAAATTAGAAAAAAAAAAAACGAATGAAATGGAAACTAA
GAAAAGACAGTTGAAACATAAGGAACCTAACAAAGCAGCTTTTAAAATATTCGATACTAA
TCTCCATTTTCAAAAGTTCTTAATCAAGTATTTCCAAAAACTGCCATTTATAAAATGACA
TTCTAAAAATCTAGACTTGGAATTTCAAAGCATCCCAATTCAGAAAGCTTTGCTACTGTT
TCTCCCCAGCCCCAAACTTCAAATAATGCAGGAAAATCATTGACGTTAGGAAGAAAATAC
TCCAAGGGAATGGGATAATTTTTAGAAAAACGCACTTACTGCTTCCAGAACCTTTAAAGA
CCCACAGCATTAACAACAATCATTTTTCCTATTTTCATCCATTATTTTCCAATGTCATGT
TAGAGATGAATAAATTCTTTGAGCCCATAACTGAAAGATCAACAAACCTGGTTTTATTAT
GACACCGTATTTTTGTCATTGGTACTGCACAAAATTATATACAAAGAAATATATACAAAA
TGTTCAAGTATTAATTAAATTTCAATTCAAGGCTTCTGTTTCAAAAAGCTACATTTAACA
TATTCCATAATGATAGCACAAATTAGTCATTTCAAATAATTTTTCCAACTACTTTTGGTT
TTTATATATATATATATAATTCAGTAGGCACTAAAAACCCATGCAGCTGCATTGTGAGGG
GCCTGCTCCTGCACTTACGTATAAGCAGGTTCGTCACTCCAGGTTGTGAGTTTGGCTACT
ATCCGTTCATGCTCAAGTGCAGTAGATGATTTTACAAAATATGCTGTAATGCACTGGAAA
CCAGAGACCAAGTTAGGTCTCAAATTGTATTATCTAGCAAGAAAACATTTACAGTTGTGC
AAGAACAAGATTCCATTTTCATAACCAAGTAACAACAAAATAAAACATATTATGTGTAAG
ATAACTTACATCTTTGGACTGCTGGAAAATACTTTTTAATTATGAACATTTTAAAATAAA
AGCAGAAGCCCTGACATTACCTCTTTTTCCTCATTTCTTATACTACCTTTTAAAATAAAG
CAGGAAATGTGGCCAGCAGCTGGTCCCGTCTCTTCTGCCCCAACAGCTGTATCCACAGGT
TGTGAGGCGGGAACGACTGTTCTGTAACCCCTACAACGGAGCCTGGCAGGAAGGAAATCA
CCTAAAAAAGAAAATTTTAAGAGAAGACGACGCCTTCCGGGCGCACGCTGAGCAGAACTC
CACCGACACCTTATCCTTGTCCACATGAAGACACACTCCTCCGGCTGAGTCGTCCTCTTC
CAGCAGGTCCTGCTGCTGCTTTCCCACCGGCAGCGCGTAGTCATGGTCCCCGGCGGGCGA
GTCTCTGAAGAGCGAGGTGGTCAGCCGCAGTCCCACGCCGCTCAGCCGGCTCAGCAAGCG
AGCCAGTCCGGTCTCGTTGGCTAAGACGGCCCGTAGGTAGCGACTCTCCTCCTGCAGTGC
TTGGACGCGCTTGCCCAGCTCCCGATTCTCGGCCCGCAGCTCCTGGTTCTCGGCTGCCAG
ACCCCGGACTCGGCTCTCCAGCCCCATCACGTACTCCTTCTTCTTCAGCCGATTCAGACG
AGCGGCCGCCGCCGCCGCCTTCCGGGGACTCTTTGTCGCCGCCTGGTTGTTGTCGTTGCC
GCCGCTGCTGCCGCCGCCGCCTCCGGGGGACTTTCTCCGCCTCTTTTCGCCGCCGCCAGT
GTCACTGCCGCTGCTGCAGCCGCCGATGCCGTTTAGCAGCCTCTGCAGCAGGTCAGAAAA
GCGCTGCATCTCAGCGGCCGCGGCCTCGTCGTCGTCGTCCCCTCGCCACAGGCCACCGCT
CTCCGAGCCTCCGCCGGACGAGGAGAGAGGCCCGGGCGAGCTGAGCCCGGGCTCCAGGTG
CCAGTCTGGCTGCCGGGGGTCCAGCAGATCCGCCAGTTCCAGCCCGGACAGAAAGTCCAT
GTCCTCCGTTTCGTCCCCGGGGACGCTGGCGACCGCCTCCTCCTCCATCTCCTCGGGCGA
GGGCGCGCGCACGGCCACGCCGCCGCGGCCCCCCCTCCCGGCCTCCGACTCGCCCTCGTT
TCCGCGAGGCTGTTTGCGGCCAGGAGATCCGGCCGCCGCCGTCCCCTCGTCCTCCGCCGC
CGCCCGGCTCAGGTCCGGGGGCAGCGAGAAGGTCGCGGCCGGCGCCGGGCTCTCGCTGCG
GGTTGGGGAGTCGCTGCCCGAGGCCGCCAGCAGTTTGGTCAGGCTATGCCTCATGGGGCC
CGGCAGCGGGCCCACGTAGGCCCCGGCCCCTCAGACCGGGCCTCGCGGGTCCCAAGGACC
CAGAGCAGGTTGCCGGGGTGCAGGCCAGAACGAAGTGAAGGGGAAGGTCGGAGTCACCTC
CCGCCCCCACTTGGCTGGTCGACCCCCCGCGCTGCGGCGGGGGGGGAGGGACGGGAGATC
GGAGCGGCGAGGCCCAACGATGACTCGACCGCGCCACCCAGACAACGGCCTGGCCGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTCATATTAATCATAATTTTTTAATTAACAAGTAGTGAATAGGACA
CTTTAAGATATTGTTTACTACATACTGAAATAAACAGATCCGTTGTAAATTCAGAAACCC
AAACATTTACAGTAAAATGTGCTTACACATAAATATGACCAAATTCATTTAAAGCCCCTG
ATAGGTCCTAAGTACATGCAATACCATGTAAAAACAAGACCATGACGCTGATGTAAAAAA
TGACAAAATCACTAAGTCACCAAAATTAGAAAAAAAAAAAACGAATGAAATGGAAACTAA
GAAAAGACAGTTGAAACATAAGGAACCTAACAAAGCAGCTTTTAAAATATTCGATACTAA
TCTCCATTTTCAAAAGTTCTTAATCAAGTATTTCCAAAAACTGCCATTTATAAAATGACA
TTCTAAAAATCTAGACTTGGAATTTCAAAGCATCCCAATTCAGAAAGCTTTGCTACTGTT
TCTCCCCAGCCCCAAACTTCAAATAATGCAGGAAAATCATTGACGTTAGGAAGAAAATAC
TCCAAGGGAATGGGATAATTTTTAGAAAAACGCACTTACTGCTTCCAGAACCTTTAAAGA
CCCACAGCATTAACAACAATCATTTTTCCTATTTTCATCCATTATTTTCCAATGTCATGT
TAGAGATGAATAAATTCTTTGAGCCCATAACTGAAAGATCAACAAACCTGGTTTTATTAT
GACACCGTATTTTTGTCATTGGTACTGCACAAAATTATATACAAAGAAATATATACAAAA
TGTTCAAGTATTAATTAAATTTCAATTCAAGGCTTCTGTTTCAAAAAGCTACATTTAACA
TATTCCATAATGATAGCACAAATTAGTCATTTCAAATAATTTTTCCAACTACTTTTGGTT
TTTATATATATATATATAATTCAGTAGGCACTAAAAACCCATGCAGCTGCATTGTGAGGG
GCCTGCTCCTGCACTTACGTATAAGCAGGTTCGTCACTCCAGGTTGTGAGTTTGGCTACT
ATCCGTTCATGCTCAAGTGCAGTAGATGATTTTACAAAATATGCTGTAATGCACTGGAAA
CCAGAGACCAAGTTAGGTCTCAAATTGTATTATCTAGCAAGAAAACATTTACAGTTGTGC
AAGAACAAGATTCCATTTTCATAACCAAGTAACAACAAAATAAAACATATTATGTGTAAG
ATAACTTACATCTTTGGACTGCTGGAAAATACTTTTTAATTATGAACATTTTAAAATAAA
AGCAGAAGCCCTGACATTACCTCTTTTTCCTCATTTCTTATACTACCTTTTAAAATAAAG
CAGGAAATGTGGCCAGCAGCTGGTCCCGTCTCTTCTGCCCCAACAGCTGTATCCACAGGT
TGTGAGGCGGGAACGACTGTTCTGTAACCCCTACAACGGAGCCTGGCAGGAAGGAAATCA
CCTAAAAAAGAAAATTTTAAGAGAAGACGACGCCTTCCGGGCGCACGCTGAGCAGAACTC
CACCGACACCTTATCCTTGTCCACATGAAGACACACTCCTCCGGCTGAGTCGTCCTCTTC
CAGCAGGTCCTGCTGCTGCTTTCCCACCGGCAGCGCGTAGTCATGGTCCCCGGCGGGCGA
GTCTCTGAAGAGCGAGGTGGTCAGCCGCAGTCCCACGCCGCTCAGCCGGCTCAGCAAGCG
AGCCAGTCCGGTCTCGTTGGCTAAGACGGCCCGTAGGTAGCGACTCTCCTCCTGCAGTGC
TTGGACGCGCTTGCCCAGCTCCCGATTCTCGGCCCGCAGCTCCTGGTTCTCGGCTGCCAG
ACCCCGGACTCGGCTCTCCAGCCCCATCACGTACTCCTTCTTCTTCAGCCGATTCAGACG
AGCGGCCGCCGCCGCCGCCTTCCGGGGACTCTTTGTCGCCGCCTGGTTGTTGTCGTTGCC
GCCGCTGCTGCCGCCGCCGCCTCCGGGGGACTTTCTCCGCCTCTTTTCGCCGCCGCCAGT
GTCACTGCCGCTGCTGCAGCCGCCGATGCCGTTTAGCAGCCTCTGCAGCAGGTCAGAAAA
GCGCTGCATCTCAGCGGCCGCGGCCTCGTCGTCGTCGTCCCCTCGCCACAGGCCACCGCT
CTCCGAGCCTCCGCCGGACGAGGAGAGAGGCCCGGGCGAGCTGAGCCCGGGCTCCAGGTG
CCAGTCTGGCTGCCGGGGGTCCAGCAGATCCGCCAGTTCCAGCCCGGACAGAAAGTCCAT
GTCCTCCGTTTCGTCCCCGGGGACGCTGGCGACCGCCTCCTCCTCCATCTCCTCGGGCGA
GGGCGCGCGCACGGCCACGCCGCCGCGGCCCCCCCTCCCGGCCTCCGACTCGCCCTCGTT
TCCGCGAGGCTGTTTGCGGCCAGGAGATCCGGCCGCCGCCGTCCCCTCGTCCTCCGCCGC
CGCCCGGCTCAGGTCCGGGGGCAGCGAGAAGGTCGCGGCCGGCGCCGGGCTCTCGCTGCG
GGTTGGGGAGTCGCTGCCCGAGGCCGCCAGCAGTTTGGTCAGGCTATGCCTCATGGGGCC
CGGCAGCGGGCCCACGTAGGCCCCGGCCCCTCAGACCGGGCCTCGCGGGTCCCAAGGACC
CAGAGCAGGTTGCCGGGGTGCAGGCCAGAACGAAGTGAAGGGGAAGGTCGGAGTCACCTC
CCGCCCCCACTTGGCTGGTCGACCCCCCGCGCTGCGGCGGGGGGGGAGGGACGGGAGATC
GGAGCGGCGAGGCCCAACGATGACTCGACCGCGCCACCCAGACAACGGCCTGGCCGGAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q52LT3_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q52LT3_HUMAN

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               171-280, - strand, RNAz p=0.65687
               

               
               358-474, - strand, RNAz p=0.751894
               

               
               867-1162, - strand, RNAz p=0.970874
               

               
               2494-2722, - strand, RNAz p=0.852593

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-280, - strand, RNAz p=0.65687
               

               
               358-474, - strand, RNAz p=0.751894
               

               
               867-1162, - strand, RNAz p=0.970874
               

               
               2494-2722, - strand, RNAz p=0.852593

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               14-1376, gnl|bosTau2|chr29 (4356695-4358056)
               

               
               14-1376, gnl|Hg17|chr11 (85049758-85051150)
               

               
               14-1376, gnl|Mm7|chr7 (86453634-86452310)
               


               
               1454-2760, gnl|bosTau2|chr29 (4359436-4360752)
               

               
               1454-2760, gnl|Hg17|chr11 (85052507-85053819)
               

               
               1454-2760, gnl|Mm7|chr7 (86450973-86449676)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1376, gnl|bosTau2|chr29 (4356695-4358056)
               

               
               14-1376, gnl|Hg17|chr11 (85049758-85051150)
               

               
               14-1376, gnl|Mm7|chr7 (86453634-86452310)
               


               
               1454-2760, gnl|bosTau2|chr29 (4359436-4360752)
               

               
               1454-2760, gnl|Hg17|chr11 (85052507-85053819)
               

               
               1454-2760, gnl|Mm7|chr7 (86450973-86449676)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

Help | Less info


               
               pla (0.534688)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               cga (0.279096)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               cga (0.279096)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	171-280, - strand, RNAz p=0.65687
	358-474, - strand, RNAz p=0.751894
	867-1162, - strand, RNAz p=0.970874
	2494-2722, - strand, RNAz p=0.852593

	14-1376, gnl\|bosTau2\|chr29 (4356695-4358056)
	14-1376, gnl\|Hg17\|chr11 (85049758-85051150)
	14-1376, gnl\|Mm7\|chr7 (86453634-86452310)

	1454-2760, gnl\|bosTau2\|chr29 (4359436-4360752)
	1454-2760, gnl\|Hg17\|chr11 (85052507-85053819)
	1454-2760, gnl\|Mm7\|chr7 (86450973-86449676)

	pla (0.534688)
	lin (0.436808)
	kid (0.389206)
	ret (0.3862)
	elu (0.385356)
	tbr (0.308356)
	cte (0.29274)
	liv (0.292569)
	cga (0.279096)
	tra (0.246184)
	eep (0.245128)
	ece (0.229305)
	hea (0.204499)
	sag (0.182715)
	cki (0.165235)
	fco (0.157208)
	isp (0.150376)
	spl (0.143184)
	lnt (0.142308)
	nmm (0.132802)
	thg (0.126791)
	bla (0.124347)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	ldo (0.0970026)