Non-Coding RNA Search

Ss1.1-LyN1-MLN01H120041.5

Sequence:


               
               CTGTCCGCAGCGAGCGCTTCCGGGGCAAAGGGCGGAGCCACGCGGAGGAAGTCCCGGGGA
GCAGCTGACACTCAGGACCGGAAGTAGCCTGAGCGATATAGGTGTCCGCTCCACAGCCGC
GCGCTCTCGTTAGGCTCTGCCGCTACGCGTGAGGCAGTGACGCGTTGCTACTTCCGGGCA
CTAAAGGCCAGGAAAAGGGGATGGAAAACAATTTCCTAGGTCCCAGCAACTATCTCCGCC
GTTACTGACACCCAAGCGTTGCCCCAGTGCGCAAGCGCTGCAGCGAGCCGCACGCTGCAA
CCGGGAGGGGGAACAGAGGCCAGGGGCGTGTCGCGTGCTGCGGTTCCGGGGCGGGGCTGG
GAGGAGGAGGCCGAATCCCAGTTCCGCAGTCGCTGCGGCAGCAATGGCGATTTTCAGTGT
GTATGTGGTGAACAAAGCTGGCGGCCTGATTTACCAGTTGGACAGCTACGCGCCACGGGC
CGAGGCTGAGAAAACGTTTAGCTACCCTCTTGATCTGCTGCTCAAGCTGCACGACGAGCG
TGTACTGGTTGCCTTCGGCCAGCGCGACGGCATCCGGGTGGGCCACGCAGTGCTGGCCAT
CAATGGTGTGGACGTGAATGGTAAATATACGGCCGATGGGAAAGAGGTGCTGGAGTACCT
GGGCAACCCTGCTAACTACCCGGTGTCCATTCGATTCGGCCGGCCTCGCCTCACCTCAAA
TGAGAAGCTCATGCTGGCCTCCATGTTCCACTCGCTGTTCGCAATCGGCTCCCAGCTGTC
TCCTGAACAGGGCAGCTCAGGCATTGAGATGCTGGAGACAGACACATTCAAACTGCACTG
CTTCCAAACACTGACAGGGATAAAGTTTGTGGTGCTGGCAGATCCTAGGCAGGCTGGGAT
AGACTCTCTTCTCCGAAAGATTTATGAGATTTACTCAGACTTTGCCCTGAAGAATCCATT
TTACTCCCTGGAAATGCCCATCAGGTGTGAGCTGTTTGACCAGAACCTGAAGTTAGCCCT
GGAGGTGGCAGAGAAGGCTGGAACTTTTGGACCTGGGTCTTAGGCTGAACCTGCAATGGA
CGCCCCACCCCAGATTCTGAGAGATCCTGCAGCAGAGGTTCTGCTGTTTCCAGTTGGATG
GAGATTTCAGCAGCCTTGCTAGTGCACTTGAAAATGGGAGGATGCTGAGCCTGATGACAT
GTACTGATCCCTGAGCCTTAATACCATGCTCTCTTCCCTCCTGTATCTTTCATGGTCCTA
CTTCCCAGCTCTGTACAGATTATTTATGGAGGAGGTAGGCCCAGAAATGCTGTAATAAAC
ATTCCTTTAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGC
CTTTTTAATTTTCCCTGGGGGGGGCCAATTTTTCCCCCCCCCCTTTTTTTTGGAAAAAGG
GGGCCCTTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCCGCAGCGAGCGCTTCCGGGGCAAAGGGCGGAGCCACGCGGAGGAAGTCCCGGGGA
GCAGCTGACACTCAGGACCGGAAGTAGCCTGAGCGATATAGGTGTCCGCTCCACAGCCGC
GCGCTCTCGTTAGGCTCTGCCGCTACGCGTGAGGCAGTGACGCGTTGCTACTTCCGGGCA
CTAAAGGCCAGGAAAAGGGGATGGAAAACAATTTCCTAGGTCCCAGCAACTATCTCCGCC
GTTACTGACACCCAAGCGTTGCCCCAGTGCGCAAGCGCTGCAGCGAGCCGCACGCTGCAA
CCGGGAGGGGGAACAGAGGCCAGGGGCGTGTCGCGTGCTGCGGTTCCGGGGCGGGGCTGG
GAGGAGGAGGCCGAATCCCAGTTCCGCAGTCGCTGCGGCAGCAATGGCGATTTTCAGTGT
GTATGTGGTGAACAAAGCTGGCGGCCTGATTTACCAGTTGGACAGCTACGCGCCACGGGC
CGAGGCTGAGAAAACGTTTAGCTACCCTCTTGATCTGCTGCTCAAGCTGCACGACGAGCG
TGTACTGGTTGCCTTCGGCCAGCGCGACGGCATCCGGGTGGGCCACGCAGTGCTGGCCAT
CAATGGTGTGGACGTGAATGGTAAATATACGGCCGATGGGAAAGAGGTGCTGGAGTACCT
GGGCAACCCTGCTAACTACCCGGTGTCCATTCGATTCGGCCGGCCTCGCCTCACCTCAAA
TGAGAAGCTCATGCTGGCCTCCATGTTCCACTCGCTGTTCGCAATCGGCTCCCAGCTGTC
TCCTGAACAGGGCAGCTCAGGCATTGAGATGCTGGAGACAGACACATTCAAACTGCACTG
CTTCCAAACACTGACAGGGATAAAGTTTGTGGTGCTGGCAGATCCTAGGCAGGCTGGGAT
AGACTCTCTTCTCCGAAAGATTTATGAGATTTACTCAGACTTTGCCCTGAAGAATCCATT
TTACTCCCTGGAAATGCCCATCAGGTGTGAGCTGTTTGACCAGAACCTGAAGTTAGCCCT
GGAGGTGGCAGAGAAGGCTGGAACTTTTGGACCTGGGTCTTAGGCTGAACCTGCAATGGA
CGCCCCACCCCAGATTCTGAGAGATCCTGCAGCAGAGGTTCTGCTGTTTCCAGTTGGATG
GAGATTTCAGCAGCCTTGCTAGTGCACTTGAAAATGGGAGGATGCTGAGCCTGATGACAT
GTACTGATCCCTGAGCCTTAATACCATGCTCTCTTCCCTCCTGTATCTTTCATGGTCCTA
CTTCCCAGCTCTGTACAGATTATTTATGGAGGAGGTAGGCCCAGAAATGCTGTAATAAAC
ATTCCTTTAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGC
CTTTTTAATTTTCCCTGGGGGGGGCCAATTTTTCCCCCCCCCCTTTTTTTTGGAAAAAGG
GGGCCCTTTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57085917|ref|XP_536548.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57085917|ref|XP_536548.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               5-582, gnl|bosTau2|chr15 (14201790-14202385)
               

               
               5-582, gnl|Hg17|chr11 (118394300-118394895)
               


               
               754-858, gnl|bosTau2|chr15 (14204011-14204115)
               

               
               754-858, gnl|Hg17|chr11 (118396070-118396174)
               

               
               754-858, gnl|Mm7|chr9 (44339691-44339587)
               


               
               983-1335, gnl|bosTau2|chr15 (14205146-14205492)
               

               
               983-1335, gnl|Hg17|chr11 (118399239-118399584)
               

               
               983-1335, gnl|Mm7|chr9 (44338445-44338105)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-582, gnl|bosTau2|chr15 (14201790-14202385)
               

               
               5-582, gnl|Hg17|chr11 (118394300-118394895)
               


               
               754-858, gnl|bosTau2|chr15 (14204011-14204115)
               

               
               754-858, gnl|Hg17|chr11 (118396070-118396174)
               

               
               754-858, gnl|Mm7|chr9 (44339691-44339587)
               


               
               983-1335, gnl|bosTau2|chr15 (14205146-14205492)
               

               
               983-1335, gnl|Hg17|chr11 (118399239-118399584)
               

               
               983-1335, gnl|Mm7|chr9 (44338445-44338105)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               hyp (0.285673)
               

               
               pgl (0.236967)
               

               
               cbl (0.229595)
               

               
               nep (0.183925)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               pgl (0.236967)
               

               
               cbl (0.229595)
               

               
               nep (0.183925)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	5-582, gnl\|bosTau2\|chr15 (14201790-14202385)
	5-582, gnl\|Hg17\|chr11 (118394300-118394895)

	754-858, gnl\|bosTau2\|chr15 (14204011-14204115)
	754-858, gnl\|Hg17\|chr11 (118396070-118396174)
	754-858, gnl\|Mm7\|chr9 (44339691-44339587)

	983-1335, gnl\|bosTau2\|chr15 (14205146-14205492)
	983-1335, gnl\|Hg17\|chr11 (118399239-118399584)
	983-1335, gnl\|Mm7\|chr9 (44338445-44338105)

	hyp (0.285673)
	pgl (0.236967)
	cbl (0.229595)
	nep (0.183925)
	cki (0.165235)
	mga (0.160205)
	cag (0.151194)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	ssp (0.13552)
	ste (0.135208)
	eep (0.122564)
	cly (0.120642)
	nbm (0.0993246)
	ldo (0.0970026)