Ss1.1-LyN1-MLN01H120067.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAGAAAGCCTACCACGCAGCGTGCAAAGAGGAGAAGCTGGCAATATCTCGAGAAACCA ATAGCAAAGCGGATCCATCCCTCAACCCCGAACAGCTGAAGAAATTGCAAGACAAAGTAG AAAAATGCAAGCAAGACGTCCTTAAGACCAAAGAGAAGTACGAGAAGTCTCTGAAGGAGC TGAGCCAGGGCACACCGCAGTACATGGAGAGCATGGAGCAGGTGTTTGAGCAGTGCCAGC AGTTCGAGGAGAAGCGCCTGCACTTCTTCCGGGAAGTCCTGCTGGAGGTTCAGAAGCACC TAGACCTGTCAAATGTGGCCGCCTACAAAAACATTTACCATGACCTGGAGCAGAGCATCA AAGCTGCCGACGCGGTGGAGGACCTGAGGTGGTTCAGAGCCAACCATGGGCCAGGCATGT CCATGAACTGGCCGCAGTTCGAGGAGTGGTCCGCAGACCTTAACCGAACTCTCAGCCGGA GAGAGAAGAAGAAGACCGCCGATGGTGTCACGCTGACCGGCATCAACCAGACGGGCGACC AGGCTCTGCAGAACAAGCCCAGCAGTGACCTTAGTGTCCCGGGCAACCCCGCACGGTCAG CGCAGTCACTGTCCAGCTACAACCCCTTCGAGGACGAGGACGACACGGGGAGCACCGTCA GTGAGAAGGAGGACGTTAAGGCCAAAAATGTGAGCAGCTACGAGAAGACCCAGAGCTACC CCACGGACTGGTCAGACGATGAGTCCAACAACCCGTTCTCCTCCACCGACGCCAATGGGG ACTCAAATCCGTTTGACGAGGACGCCACCTCGGGGACAGAAGTGCGGGTCCGGGCCCTTT ACGACTACGAAGGGCAGGAGCACGATGAGCTGAGCTTNCAGGCCGGGGACGAGCTNGACC AGATAGAGGACGAGGATGAGCAGGGCTGGTGCAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAGAAAGCCTACCACGCAGCGTGCAAAGAGGAGAAGCTGGCAATATCTCGAGAAACCA ATAGCAAAGCGGATCCATCCCTCAACCCCGAACAGCTGAAGAAATTGCAAGACAAAGTAG AAAAATGCAAGCAAGACGTCCTTAAGACCAAAGAGAAGTACGAGAAGTCTCTGAAGGAGC TGAGCCAGGGCACACCGCAGTACATGGAGAGCATGGAGCAGGTGTTTGAGCAGTGCCAGC AGTTCGAGGAGAAGCGCCTGCACTTCTTCCGGGAAGTCCTGCTGGAGGTTCAGAAGCACC TAGACCTGTCAAATGTGGCCGCCTACAAAAACATTTACCATGACCTGGAGCAGAGCATCA AAGCTGCCGACGCGGTGGAGGACCTGAGGTGGTTCAGAGCCAACCATGGGCCAGGCATGT CCATGAACTGGCCGCAGTTCGAGGAGTGGTCCGCAGACCTTAACCGAACTCTCAGCCGGA GAGAGAAGAAGAAGACCGCCGATGGTGTCACGCTGACCGGCATCAACCAGACGGGCGACC AGGCTCTGCAGAACAAGCCCAGCAGTGACCTTAGTGTCCCGGGCAACCCCGCACGGTCAG CGCAGTCACTGTCCAGCTACAACCCCTTCGAGGACGAGGACGACACGGGGAGCACCGTCA GTGAGAAGGAGGACGTTAAGGCCAAAAATGTGAGCAGCTACGAGAAGACCCAGAGCTACC CCACGGACTGGTCAGACGATGAGTCCAACAACCCGTTCTCCTCCACCGACGCCAATGGGG ACTCAAATCCGTTTGACGAGGACGCCACCTCGGGGACAGAAGTGCGGGTCCGGGCCCTTT ACGACTACGAAGGGCAGGAGCACGATGAGCTGAGCTTNCAGGCCGGGGACGAGCTNGACC AGATAGAGGACGAGGATGAGCAGGGCTGGTGCAAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 184-308, + strand, RNAz p=0.598353 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 184-308, + strand, RNAz p=0.598353 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 145-308, gnl|bosTau2|chr23 (6732414-6732577) | |
| 145-308, gnl|Hg17|chr6 (34605419-34605582) | |
| 145-308, gnl|Mm7|chr17 (25891546-25891709) | |
| 323-444, gnl|bosTau2|chr5 (71547023-71546902) | |
| 323-444, gnl|canFam2|chr10 (25701860-25701706) | |
| 323-444, gnl|danRer3|chrNA (12784884-12785012) | |
| 323-444, gnl|echTel1|scaffold_277516 (39950-39806) | |
| 323-444, gnl|fr1|chrUn (39536243-39536099) | |
| 323-444, gnl|galGal2|chr1 (65008856-65008986) | |
| 323-444, gnl|hg17|chr22 (41602681-41602830) | |
| 323-444, gnl|Hg17|chr22 (41602808-41602687) | |
| 323-444, gnl|loxAfr1|scaffold_8258 (13790-13639) | |
| 323-444, gnl|mm7|chr15 (83467303-83467452) | |
| 323-444, gnl|Mm7|chr15 (83467428-83467307) | |
| 323-444, gnl|monDom2|scaffold_4018 (1188-1025) | |
| 323-444, gnl|oryCun1|scaffold_160538 (12429-12582) | |
| 323-444, gnl|panTro1|chr23 (41862215-41862364) | |
| 323-444, gnl|rheMac2|chr10 (86864555-86864704) | |
| 323-444, gnl|rn3|chr7 (121571141-121570992) | |
| 323-444, gnl|tetNig1|chr19 (1659560-1659439) | |
| 323-444, gnl|xenTro1|scaffold_1116 (196474-196629) | |
| 558-688, gnl|bosTau2|chr5 (71542080-71541950) | |
| 558-688, gnl|canFam2|chr10 (25707209-25706966) | |
| 558-688, gnl|dasNov1|scaffold_198685 (6824-6577) | |
| 558-688, gnl|galGal2|chr1 (65005941-65006160) | |
| 558-688, gnl|hg17|chr22 (41597316-41597559) | |
| 558-688, gnl|Hg17|chr22 (41597520-41597392) | |
| 558-688, gnl|loxAfr1|scaffold_8258 (19609-19379) | |
| 558-688, gnl|mm7|chr15 (83461924-83462170) | |
| 558-688, gnl|Mm7|chr15 (83462135-83462005) | |
| 558-688, gnl|oryCun1|scaffold_160538 (8070-8306) | |
| 558-688, gnl|panTro1|chr23 (41856853-41857098) | |
| 558-688, gnl|rheMac2|chr10 (86858994-86859239) | |
| 558-688, gnl|rn3|chr7 (121577074-121576828) | |
| 558-688, gnl|xenTro1|scaffold_1116 (194416-194640) | |
| 689-889, gnl|bosTau2|chr23 (6734390-6734581) | |
| 689-889, gnl|Hg17|chr6 (34607355-34607546) | |
| 689-889, gnl|Mm7|chr17 (25893511-25893702) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 145-308, gnl|bosTau2|chr23 (6732414-6732577) | |
| 145-308, gnl|Hg17|chr6 (34605419-34605582) | |
| 145-308, gnl|Mm7|chr17 (25891546-25891709) | |
| 323-444, gnl|bosTau2|chr5 (71547023-71546902) | |
| 323-444, gnl|canFam2|chr10 (25701860-25701706) | |
| 323-444, gnl|danRer3|chrNA (12784884-12785012) | |
| 323-444, gnl|echTel1|scaffold_277516 (39950-39806) | |
| 323-444, gnl|fr1|chrUn (39536243-39536099) | |
| 323-444, gnl|galGal2|chr1 (65008856-65008986) | |
| 323-444, gnl|hg17|chr22 (41602681-41602830) | |
| 323-444, gnl|Hg17|chr22 (41602808-41602687) | |
| 323-444, gnl|loxAfr1|scaffold_8258 (13790-13639) | |
| 323-444, gnl|mm7|chr15 (83467303-83467452) | |
| 323-444, gnl|Mm7|chr15 (83467428-83467307) | |
| 323-444, gnl|monDom2|scaffold_4018 (1188-1025) | |
| 323-444, gnl|oryCun1|scaffold_160538 (12429-12582) | |
| 323-444, gnl|panTro1|chr23 (41862215-41862364) | |
| 323-444, gnl|rheMac2|chr10 (86864555-86864704) | |
| 323-444, gnl|rn3|chr7 (121571141-121570992) | |
| 323-444, gnl|tetNig1|chr19 (1659560-1659439) | |
| 323-444, gnl|xenTro1|scaffold_1116 (196474-196629) | |
| 558-688, gnl|bosTau2|chr5 (71542080-71541950) | |
| 558-688, gnl|canFam2|chr10 (25707209-25706966) | |
| 558-688, gnl|dasNov1|scaffold_198685 (6824-6577) | |
| 558-688, gnl|galGal2|chr1 (65005941-65006160) | |
| 558-688, gnl|hg17|chr22 (41597316-41597559) | |
| 558-688, gnl|Hg17|chr22 (41597520-41597392) | |
| 558-688, gnl|loxAfr1|scaffold_8258 (19609-19379) | |
| 558-688, gnl|mm7|chr15 (83461924-83462170) | |
| 558-688, gnl|Mm7|chr15 (83462135-83462005) | |
| 558-688, gnl|oryCun1|scaffold_160538 (8070-8306) | |
| 558-688, gnl|panTro1|chr23 (41856853-41857098) | |
| 558-688, gnl|rheMac2|chr10 (86858994-86859239) | |
| 558-688, gnl|rn3|chr7 (121577074-121576828) | |
| 558-688, gnl|xenTro1|scaffold_1116 (194416-194640) | |
| 689-889, gnl|bosTau2|chr23 (6734390-6734581) | |
| 689-889, gnl|Hg17|chr6 (34607355-34607546) | |
| 689-889, gnl|Mm7|chr17 (25893511-25893702) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| nmm (0.132802) |