Non-Coding RNA Search

Ss1.1-LyN1-MLN01H120079.5

Sequence:


               
               GCAACATCCGAGTTGAGGAAGTCGCGGCGGCACGTTGCGGGTGGTAAGGCGGCTGCTTGT
TGGAGGTGATGTCCTTGGACGTGACCAGGGCAACCGCGGGGATGGTGCTTGCAGAGCTTT
ATGTCTCGGACCGAGAGGGAAGTGATGCTACTGGTGATGGAACCAAGGAGAAACCTTTTA
AAACAGGTCTTAAGGCTTTGATGACAGCTGGAAAAGAACCTTTTCCTACCATTTACGTAG
ATTCACAAAAAGAAAATGAGAGGTGGGATGTTATTTCTAAATCACAGATGAAGAACATTA
GAAAAATGTGGCACAGGGAACAGATGAAGAGTGAATCCCGGGAAAAGAAAGAGGCGGAAG
ACAATCTGCGAAGAGAGAAGAACCTGGAAGAAGCAAAGAAGATTACCATAAAAAATGATC
CAAGTCTCCCAGAGCCAAAATGTGTGAAGATTTGTGCATTAGAAGGGTATCGAGGTCAAA
GAGTGAAAGTATTTGGCTGGGTCCACAGGCTGCGTAGGCAAGGAAAGAATTTAATGTTTC
TTGTGTTGCGAGATGGTACAGGTTATCTTCAGTGCGTCTTGTCAGATGATCTGTGTCAGT
GTTACAATGGAGTAGTCTTGTCCACTGAGAGTAGTGTTGCAGTGTATGGCATGCTAAAAC
TCACCCCAAAGGGCAAGCAGGCTCCAGGGGGCCATGAGCTGAGTTGTGACTTCTGGGAAC
TGATTGGATTGGCCCCTGCTGGAGGTGCTGATAACTTGATCAATGAGGAGTCTGATGTTG
ACGTCCAGCTCAACAACAGACACATGATGATCCGGGGAGAAAACATGTCCAAAATCCTAA
AAGCACGTTCCGTGATCACCAGGTGCTTTAGAGAGCACTTCTTCGATAGGGGGTACTACG
AAGTCACTCCTCCAACATTAGTGCAAACACAGGTGGAAGGCGGGGCCACACTCTTCAAGC
TGGATTATTTTGGAGAAGAGGCATACCTGACACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACATCCGAGTTGAGGAAGTCGCGGCGGCACGTTGCGGGTGGTAAGGCGGCTGCTTGT
TGGAGGTGATGTCCTTGGACGTGACCAGGGCAACCGCGGGGATGGTGCTTGCAGAGCTTT
ATGTCTCGGACCGAGAGGGAAGTGATGCTACTGGTGATGGAACCAAGGAGAAACCTTTTA
AAACAGGTCTTAAGGCTTTGATGACAGCTGGAAAAGAACCTTTTCCTACCATTTACGTAG
ATTCACAAAAAGAAAATGAGAGGTGGGATGTTATTTCTAAATCACAGATGAAGAACATTA
GAAAAATGTGGCACAGGGAACAGATGAAGAGTGAATCCCGGGAAAAGAAAGAGGCGGAAG
ACAATCTGCGAAGAGAGAAGAACCTGGAAGAAGCAAAGAAGATTACCATAAAAAATGATC
CAAGTCTCCCAGAGCCAAAATGTGTGAAGATTTGTGCATTAGAAGGGTATCGAGGTCAAA
GAGTGAAAGTATTTGGCTGGGTCCACAGGCTGCGTAGGCAAGGAAAGAATTTAATGTTTC
TTGTGTTGCGAGATGGTACAGGTTATCTTCAGTGCGTCTTGTCAGATGATCTGTGTCAGT
GTTACAATGGAGTAGTCTTGTCCACTGAGAGTAGTGTTGCAGTGTATGGCATGCTAAAAC
TCACCCCAAAGGGCAAGCAGGCTCCAGGGGGCCATGAGCTGAGTTGTGACTTCTGGGAAC
TGATTGGATTGGCCCCTGCTGGAGGTGCTGATAACTTGATCAATGAGGAGTCTGATGTTG
ACGTCCAGCTCAACAACAGACACATGATGATCCGGGGAGAAAACATGTCCAAAATCCTAA
AAGCACGTTCCGTGATCACCAGGTGCTTTAGAGAGCACTTCTTCGATAGGGGGTACTACG
AAGTCACTCCTCCAACATTAGTGCAAACACAGGTGGAAGGCGGGGCCACACTCTTCAAGC
TGGATTATTTTGGAGAAGAGGCATACCTGACACAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61830774|ref|XP_589068.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61830774|ref|XP_589068.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-996, gnl|bosTau2|chr18 (14094370-14093375)
               

               
               1-996, gnl|Hg17|chr18 (53434211-53425470)
               

               
               1-996, gnl|Mm7|chr18 (64904928-64893367)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-996, gnl|bosTau2|chr18 (14094370-14093375)
               

               
               1-996, gnl|Hg17|chr18 (53434211-53425470)
               

               
               1-996, gnl|Mm7|chr18 (64904928-64893367)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)

	1-996, gnl\|bosTau2\|chr18 (14094370-14093375)
	1-996, gnl\|Hg17\|chr18 (53434211-53425470)
	1-996, gnl\|Mm7\|chr18 (64904928-64893367)