Non-Coding RNA Search

Ss1.1-LyN1-MLN01H120095.5

Sequence:


               
               ACGGAGGAAATGGTATTAAGCTTATCATGGAATTCCTGCCTTCGGGAAGCCTTAAGGAGT
ATCTTCCAAAGAATAAAAACAAAATCAACCTCAAACAGCAGTTAAAATACGCCGTTCAGA
TTTGTAAGGGGATGGACTATTTGGGTTCTCGGCAATACGTTCACCGGGACTTGGCAGCAA
GAAATGTTCTTGTCGAGAGTGAACACCAAGTGAAAATTGGAGACTTCGGTCTCACCAAAG
CCATCGAAACCGATAAGGAGTACTACACAGTCAAGGACGATCGGGACAGCCCTGTGTTTT
GGTATGCTCCGGAGTGTTTAATTCAGTGTAAATTTTACATCGCCTCCGATGTCTGGTCTT
TCGGGGTGACTCTGCATGAGCTGCTCACTTACTGTGATTCGGATTCCAGTCCCATGGCGT
TGTTCCTGAAAATGATAGGCCCAACTCATGGCCAGATGACGGTAACAAGACTTGTGAATA
CATTAAAAGAAGGAAAACGTTTGCCTTGTCCACCTAACTGTCCAGAAGAGGTTTATCAAC
TGATGAGAAAATGCTGGGAATTCCAACCATCTAATCGGACAACCTTTCAGAACCTTATTG
AAGGATTTGAAGCACTTTTAAAATAAGCATGGATAACATTTAAATTCTACTATGTTTCAA
GTCCTCCTCCCCAACAGTACCCAAGCCATTTAAAAATATTTTCAGTGGGAAGTGTTTATA
TTCTGTCTAAAAAGATACTGGAGTAGCCATCCATGTGTGAAGCACATCCTGGTGCTTAAT
ATGTGTAAGTACTTCCTCTTTAAATTTGGCACCAGTAACACAGTGACAAATGATGACAGC
CCACATATTAGAAAGCACTTAAGCACTCCTCCTTTTGGAAAGAATATACCACTGTTTCCT
CTGGTTAGTTTACCATCACAGTTGAGCGCCAGAGTGGTATCTTTCAAAGCAAGAGGAGCT
GACCAAAATAAATCTCTCAAGATGATTGCTTTTTCTTAGCTGCCAGTTCATGTGAAATGT
TTGTCTGGCACATATCAAAGATAAAGATTGATGGACTTAAATTTCAATATCTATACAGTG
CTAGAGGAAGCATTCTTGAAATATTAGATACCCGTTAGTGTACTATTGTTTCTATACAAA
GATGAGTGTATTCCTGTCAACAGTAGGACATAAACTTTGAGTTGTTTCTGCAGTGGCTTA
GCTCCTGCCCCCTTGGGTGACCGGCGGTACCCATTTTTGAGAAAACTGGTCACACGTAGG
GGGGCAGCTGTGGGATACTTTGCTGCATGTTAACTCTTGAGAACTAAGCCTGTGCCAGTG
CTTTTCCTCAACAGTATACCTTTAATCCGAATTGATTCTGAGAACGTGGATGCTCTTACA
CATGCTTTTCTGAAATGTCAATGTATCCTCTTATAACTACCACTTTGGGGCGAGCTGTTC
CAGCATTGGTTTTGGATGCTGAATGCATATATACCACGTACACCGCACTGTTGTTAGAGT
GTTTCCGTACCTACCATCCCTCCGCCTACAAGAGTCGAGCACTATTGTGACCATGACCCT
GCGGCGCAAAACTTGAAAGACCCAGCTTGGAGCACCATGGAGTTCAGGATCCACTAGGCA
GTTTTCAGTGTGCTGGGAGGTAACTGCGTAATCAAAAAATGTCAAATCTCTGATTCAATG
TGAACCGTAAGAGCTTTCTGACCACGAGTCTGAAAAACATTTTTCGTTGATGCTGGCTAG
CATTTGTTTGATACCGTTACTTTTCCACCTTTGAGCCTGAAAAAGTGATGTACTGATTCA
ATGGCAACAACAAACTTGCCATTCAAATCTGTCCAATAACCCTCCATCACCACGGTCTCT
GTCTGTCAAACCTGTGGCCACTCTATATGCACTTTGTTTACTCTTTATACAAATAAATGT
ACTAGAGACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGAGGAAATGGTATTAAGCTTATCATGGAATTCCTGCCTTCGGGAAGCCTTAAGGAGT
ATCTTCCAAAGAATAAAAACAAAATCAACCTCAAACAGCAGTTAAAATACGCCGTTCAGA
TTTGTAAGGGGATGGACTATTTGGGTTCTCGGCAATACGTTCACCGGGACTTGGCAGCAA
GAAATGTTCTTGTCGAGAGTGAACACCAAGTGAAAATTGGAGACTTCGGTCTCACCAAAG
CCATCGAAACCGATAAGGAGTACTACACAGTCAAGGACGATCGGGACAGCCCTGTGTTTT
GGTATGCTCCGGAGTGTTTAATTCAGTGTAAATTTTACATCGCCTCCGATGTCTGGTCTT
TCGGGGTGACTCTGCATGAGCTGCTCACTTACTGTGATTCGGATTCCAGTCCCATGGCGT
TGTTCCTGAAAATGATAGGCCCAACTCATGGCCAGATGACGGTAACAAGACTTGTGAATA
CATTAAAAGAAGGAAAACGTTTGCCTTGTCCACCTAACTGTCCAGAAGAGGTTTATCAAC
TGATGAGAAAATGCTGGGAATTCCAACCATCTAATCGGACAACCTTTCAGAACCTTATTG
AAGGATTTGAAGCACTTTTAAAATAAGCATGGATAACATTTAAATTCTACTATGTTTCAA
GTCCTCCTCCCCAACAGTACCCAAGCCATTTAAAAATATTTTCAGTGGGAAGTGTTTATA
TTCTGTCTAAAAAGATACTGGAGTAGCCATCCATGTGTGAAGCACATCCTGGTGCTTAAT
ATGTGTAAGTACTTCCTCTTTAAATTTGGCACCAGTAACACAGTGACAAATGATGACAGC
CCACATATTAGAAAGCACTTAAGCACTCCTCCTTTTGGAAAGAATATACCACTGTTTCCT
CTGGTTAGTTTACCATCACAGTTGAGCGCCAGAGTGGTATCTTTCAAAGCAAGAGGAGCT
GACCAAAATAAATCTCTCAAGATGATTGCTTTTTCTTAGCTGCCAGTTCATGTGAAATGT
TTGTCTGGCACATATCAAAGATAAAGATTGATGGACTTAAATTTCAATATCTATACAGTG
CTAGAGGAAGCATTCTTGAAATATTAGATACCCGTTAGTGTACTATTGTTTCTATACAAA
GATGAGTGTATTCCTGTCAACAGTAGGACATAAACTTTGAGTTGTTTCTGCAGTGGCTTA
GCTCCTGCCCCCTTGGGTGACCGGCGGTACCCATTTTTGAGAAAACTGGTCACACGTAGG
GGGGCAGCTGTGGGATACTTTGCTGCATGTTAACTCTTGAGAACTAAGCCTGTGCCAGTG
CTTTTCCTCAACAGTATACCTTTAATCCGAATTGATTCTGAGAACGTGGATGCTCTTACA
CATGCTTTTCTGAAATGTCAATGTATCCTCTTATAACTACCACTTTGGGGCGAGCTGTTC
CAGCATTGGTTTTGGATGCTGAATGCATATATACCACGTACACCGCACTGTTGTTAGAGT
GTTTCCGTACCTACCATCCCTCCGCCTACAAGAGTCGAGCACTATTGTGACCATGACCCT
GCGGCGCAAAACTTGAAAGACCCAGCTTGGAGCACCATGGAGTTCAGGATCCACTAGGCA
GTTTTCAGTGTGCTGGGAGGTAACTGCGTAATCAAAAAATGTCAAATCTCTGATTCAATG
TGAACCGTAAGAGCTTTCTGACCACGAGTCTGAAAAACATTTTTCGTTGATGCTGGCTAG
CATTTGTTTGATACCGTTACTTTTCCACCTTTGAGCCTGAAAAAGTGATGTACTGATTCA
ATGGCAACAACAAACTTGCCATTCAAATCTGTCCAATAACCCTCCATCACCACGGTCTCT
GTCTGTCAAACCTGTGGCCACTCTATATGCACTTTGTTTACTCTTTATACAAATAAATGT
ACTAGAGACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5FVF5_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5FVF5_RAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               854-972, - strand, RNAz p=0.875721
               

               
               1180-1289, - strand, RNAz p=0.864312

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               854-972, - strand, RNAz p=0.875721
               

               
               1180-1289, - strand, RNAz p=0.864312

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               127-304, gnl|bosTau2|chr3 (54758860-54759037)
               

               
               127-304, gnl|Hg17|chr1 (65015810-65015633)
               

               
               127-304, gnl|Mm7|chr4 (100533006-100532829)
               


               
               526-1933, gnl|bosTau2|chr3 (54761696-54763119)
               

               
               526-1933, gnl|Hg17|chr1 (65012366-65010933)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-304, gnl|bosTau2|chr3 (54758860-54759037)
               

               
               127-304, gnl|Hg17|chr1 (65015810-65015633)
               

               
               127-304, gnl|Mm7|chr4 (100533006-100532829)
               


               
               526-1933, gnl|bosTau2|chr3 (54761696-54763119)
               

               
               526-1933, gnl|Hg17|chr1 (65012366-65010933)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               cbl (1.49237)
               

               
               hyp (0.42851)
               

               
               tes (0.415628)
               

               
               jej (0.395687)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               mcp (0.341297)
               

               
               cty (0.31224)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.49237)
               

               
               hyp (0.42851)
               

               
               tes (0.415628)
               

               
               jej (0.395687)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               mcp (0.341297)
               

               
               cty (0.31224)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	854-972, - strand, RNAz p=0.875721
	1180-1289, - strand, RNAz p=0.864312

	127-304, gnl\|bosTau2\|chr3 (54758860-54759037)
	127-304, gnl\|Hg17\|chr1 (65015810-65015633)
	127-304, gnl\|Mm7\|chr4 (100533006-100532829)

	526-1933, gnl\|bosTau2\|chr3 (54761696-54763119)
	526-1933, gnl\|Hg17\|chr1 (65012366-65010933)

	cbl (1.49237)
	hyp (0.42851)
	tes (0.415628)
	jej (0.395687)
	thg (0.380373)
	gul (0.355177)
	sin (0.349895)
	mcp (0.341297)
	cty (0.31224)
	fat (0.294855)
	spl (0.286369)
	nca (0.273748)
	fce (0.271592)
	pan (0.23596)
	mgp (0.230681)
	mas (0.210305)
	hea (0.204499)
	fcc (0.197785)
	ldo (0.194005)
	fty (0.17584)
	ton (0.1755)
	rec (0.17307)
	fhi (0.169578)
	nje (0.16592)
	cag (0.151194)
	ski (0.146735)
	csk (0.140746)
	pla (0.133672)
	lyg (0.133103)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	cly (0.120642)
	clu (0.119646)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)