Non-Coding RNA Search

Ss1.1-LyN2-AR031G05LN05GG05S.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTCCCTGAAAACCAGCATGCTTCACGGAATGCTAACATTGG
TGTTTTTGTAAGAGGGATGTACATAAATGTATTTTGCACTGTCACAATGACTCCCTAGGC
ATGCTTTTTTTGTTTTTGTTTTTGTTTTTTTTGTTTTTTGGTGTTTTTTTTTTTTGAGCA
AACTTTTTAAATATGCTAGAGCCATTTCACCAAGTTTAGCTGTAGCATTGAGTAGTAGTG
GAATTTTTCTTTTTTCCTTTTTCTTTTTTTTTTTGTTGAAAAATCATTATTAGGGACTTT
TTAAAAAAATAAAATAAGATATCCTACTTTAAAAATAAAAGACAGTGCATGCATATTGCT
GTAAGGTTGTTTAAGTATTTCTAATTTTACAAAAAAAAAAAAAAAAAAAAGGATAAATCA
TTAGAGCTCCAAATGCTGATGTGT------------TTAACACTGCTGAATGCCAGGTTA
TACAGTATTCTTACAAAAAGGGAAGTCAGCCAAAGACTGATCTGATGGACCAAAATCGGA
ATTTTGAAAAGCACCAGTACTACTTTCCAAAATGATCAGCAGGTTAAACATGTTCAGCAA
GGTATAGTGTGAATCCATTAACCCTTCGTCGTCCAG------------NACTACTTGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTCCCTGAAAACCAGCATGCTTCACGGAATGCTAACATTGG
TGTTTTTGTAAGAGGGATGTACATAAATGTATTTTGCACTGTCACAATGACTCCCTAGGC
ATGCTTTTTTTGTTTTTGTTTTTGTTTTTTTTGTTTTTTGGTGTTTTTTTTTTTTGAGCA
AACTTTTTAAATATGCTAGAGCCATTTCACCAAGTTTAGCTGTAGCATTGAGTAGTAGTG
GAATTTTTCTTTTTTCCTTTTTCTTTTTTTTTTTGTTGAAAAATCATTATTAGGGACTTT
TTAAAAAAATAAAATAAGATATCCTACTTTAAAAATAAAAGACAGTGCATGCATATTGCT
GTAAGGTTGTTTAAGTATTTCTAATTTTACAAAAAAAAAAAAAAAAAAAAGGATAAATCA
TTAGAGCTCCAAATGCTGATGTGT------------TTAACACTGCTGAATGCCAGGTTA
TACAGTATTCTTACAAAAAGGGAAGTCAGCCAAAGACTGATCTGATGGACCAAAATCGGA
ATTTTGAAAAGCACCAGTACTACTTTCCAAAATGATCAGCAGGTTAAACATGTTCAGCAA
GGTATAGTGTGAATCCATTAACCCTTCGTCGTCCAG------------NACTACTTGTTA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               12-141, - strand, RNAz p=0.999165
               

               
               164-280, + strand, RNAz p=0.830239
               

               
               502-612, - strand, RNAz p=0.596463

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-141, - strand, RNAz p=0.999165
               

               
               164-280, + strand, RNAz p=0.830239
               

               
               502-612, - strand, RNAz p=0.596463

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               23-124, DB176596 TKIDN2 Homo sapiens cDNA clone TKIDN2013196 5', mRNA 
(dbj|DB176596.1|), blast E-value=5.04467e-44, identity=98.08% 
               

               
               23-124, DKFZp781A0240_r1 781 (synonym (emb|BX493433.1|), blast 
E-value=5.04467e-44, identity=98.08% 
               

               
               22-124, CR551603 Normalized and Subtracted bovine embryonic and 
(emb|CR551603.2|), blast E-value=2e-40, identity=97.17% 
               

               
               24-124, SB02007A1A08.f1 normalized Keck-Tagu Library SB02 Taeniopygia 
(gb|CK310770.1|), blast E-value=4.99997e-41, identity=97.09% 
               

               
               22-124, BE04012A1E05 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN437280.1|), blast E-value=9.80909e-45, identity=98.1% 
               

               
               22-124, 000217BCEB009008HT BCEB Bos taurus cDNA, mRNA sequence (gb|DY072086.1|), 
blast E-value=9.80909e-45, identity=98.1%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               23-124, DB176596 TKIDN2 Homo sapiens cDNA clone TKIDN2013196 5', mRNA 
(dbj|DB176596.1|), blast E-value=5.04467e-44, identity=98.08% 
               

               
               23-124, DKFZp781A0240_r1 781 (synonym (emb|BX493433.1|), blast 
E-value=5.04467e-44, identity=98.08% 
               

               
               22-124, CR551603 Normalized and Subtracted bovine embryonic and 
(emb|CR551603.2|), blast E-value=2e-40, identity=97.17% 
               

               
               24-124, SB02007A1A08.f1 normalized Keck-Tagu Library SB02 Taeniopygia 
(gb|CK310770.1|), blast E-value=4.99997e-41, identity=97.09% 
               

               
               22-124, BE04012A1E05 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN437280.1|), blast E-value=9.80909e-45, identity=98.1% 
               

               
               22-124, 000217BCEB009008HT BCEB Bos taurus cDNA, mRNA sequence (gb|DY072086.1|), 
blast E-value=9.80909e-45, identity=98.1%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               12-141, gnl|bosTau2|chr14 (45338271-45338140)
               

               
               12-141, gnl|Hg17|chr8 (93040272-93040133)
               

               
               12-141, gnl|Mm7|chr4 (13818382-13818502)
               


               
               164-624, gnl|bosTau2|chr14 (45338151-45337693)
               

               
               164-624, gnl|Hg17|chr8 (93040144-93039700)
               

               
               164-624, gnl|Mm7|chr4 (13818491-13818940)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-141, gnl|bosTau2|chr14 (45338271-45338140)
               

               
               12-141, gnl|Hg17|chr8 (93040272-93040133)
               

               
               12-141, gnl|Mm7|chr4 (13818382-13818502)
               


               
               164-624, gnl|bosTau2|chr14 (45338151-45337693)
               

               
               164-624, gnl|Hg17|chr8 (93040144-93039700)
               

               
               164-624, gnl|Mm7|chr4 (13818491-13818940)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               nco (0.161734)

	12-141, - strand, RNAz p=0.999165
	164-280, + strand, RNAz p=0.830239
	502-612, - strand, RNAz p=0.596463

	23-124, DB176596 TKIDN2 Homo sapiens cDNA clone TKIDN2013196 5', mRNA (dbj\|DB176596.1\|), blast E-value=5.04467e-44, identity=98.08%
	23-124, DKFZp781A0240_r1 781 (synonym (emb\|BX493433.1\|), blast E-value=5.04467e-44, identity=98.08%
	22-124, CR551603 Normalized and Subtracted bovine embryonic and (emb\|CR551603.2\|), blast E-value=2e-40, identity=97.17%
	24-124, SB02007A1A08.f1 normalized Keck-Tagu Library SB02 Taeniopygia (gb\|CK310770.1\|), blast E-value=4.99997e-41, identity=97.09%
	22-124, BE04012A1E05 BE04 Normalized and Subtracted bovine embryonic and (gb\|CN437280.1\|), blast E-value=9.80909e-45, identity=98.1%
	22-124, 000217BCEB009008HT BCEB Bos taurus cDNA, mRNA sequence (gb\|DY072086.1\|), blast E-value=9.80909e-45, identity=98.1%

	12-141, gnl\|bosTau2\|chr14 (45338271-45338140)
	12-141, gnl\|Hg17\|chr8 (93040272-93040133)
	12-141, gnl\|Mm7\|chr4 (13818382-13818502)

	164-624, gnl\|bosTau2\|chr14 (45338151-45337693)
	164-624, gnl\|Hg17\|chr8 (93040144-93039700)
	164-624, gnl\|Mm7\|chr4 (13818491-13818940)