Non-Coding RNA Search

Ss1.1-LyN2-AR032D09LN05FD09S.5

Sequence:


               
               GGACCAGCGAGGAGGGATCCCTGGGCCGCCTCCATCGACTAGGTTCCCCCATCCATTTCC
CCACGCTGAGCTGGGGCCTTCAGGCCTCCTCTCCCCCCGTGGCCCTGGAAGCCCTGCCCA
AACTGTCCCTGGCCTCCTGTCTCCACCCTTGCGTTATCCACCACATCACCTGAACCCTGC
CAGCTGGCCCCTCCCCCAGACTCAGAGCAGAAGACCCTGCCCTCCCCATCTCCAGGACTC
CTCAAGGGGCCAGGGCATCCTGGGACCTGGGCCCCAACGTCTACCTCACACCAGATGAAC
AGGAACCTCTCCCTACTAAGGCAAAGCCATGTGTATATCCCTCGGGGATGAAAGATGCTG
TGCGGGGGGGCGGCTCACTGCACACTGAGACCTATACTCTCAAACCACGGCTAGGAGCAT
CCCTGGCAGGCATGCCTCTTGCCACAGAGACCTTCTGATGAGGGACAGGAGACCCACATC
CACTGAAATAGCCTTTCTTATGGTTCTTAAGCAGGTGGCTTCTGCTGGAAGCAGGAGGGA
GAAATAAAATCCCCCAAGGCTCCAGAAGGGATCTGTACAAACGTTTAGGTTTTCAGACTT
TTAACAGACCCGGCAGTAGGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCAGCGAGGAGGGATCCCTGGGCCGCCTCCATCGACTAGGTTCCCCCATCCATTTCC
CCACGCTGAGCTGGGGCCTTCAGGCCTCCTCTCCCCCCGTGGCCCTGGAAGCCCTGCCCA
AACTGTCCCTGGCCTCCTGTCTCCACCCTTGCGTTATCCACCACATCACCTGAACCCTGC
CAGCTGGCCCCTCCCCCAGACTCAGAGCAGAAGACCCTGCCCTCCCCATCTCCAGGACTC
CTCAAGGGGCCAGGGCATCCTGGGACCTGGGCCCCAACGTCTACCTCACACCAGATGAAC
AGGAACCTCTCCCTACTAAGGCAAAGCCATGTGTATATCCCTCGGGGATGAAAGATGCTG
TGCGGGGGGGCGGCTCACTGCACACTGAGACCTATACTCTCAAACCACGGCTAGGAGCAT
CCCTGGCAGGCATGCCTCTTGCCACAGAGACCTTCTGATGAGGGACAGGAGACCCACATC
CACTGAAATAGCCTTTCTTATGGTTCTTAAGCAGGTGGCTTCTGCTGGAAGCAGGAGGGA
GAAATAAAATCCCCCAAGGCTCCAGAAGGGATCTGTACAAACGTTTAGGTTTTCAGACTT
TTAACAGACCCGGCAGTAGGGGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               42-361, - strand, RNAz p=0.989816
               

               
               499-618, - strand, RNAz p=0.64107

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-361, - strand, RNAz p=0.989816
               

               
               499-618, - strand, RNAz p=0.64107

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               164-340, - strand, RNAmicro p=0.941553

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               164-340, - strand, RNAmicro p=0.941553

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-624, gnl|bosTau2|chr11 (7794613-7793987)
               

               
               3-624, gnl|Hg17|chr2 (74631708-74632310)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-624, gnl|bosTau2|chr11 (7794613-7793987)
               

               
               3-624, gnl|Hg17|chr2 (74631708-74632310)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.267344)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               cly (0.120642)

	42-361, - strand, RNAz p=0.989816
	499-618, - strand, RNAz p=0.64107

	3-624, gnl\|bosTau2\|chr11 (7794613-7793987)
	3-624, gnl\|Hg17\|chr2 (74631708-74632310)