Non-Coding RNA Search

Ss1.1-LyN2-AR032H05LN05FH05S.5

Sequence:


               
               CCTCTCANTGGCTCTATTATCTTGGTCCAGTAGACTGCTACTTAGAAAGGGTCTAAAATC
TTGGAAAAACATCGTGGGGTCCAAATGGTCCCAGAACTCTGCAAAATGTGTTGATGTACT
GCCGCCACCACCTAAAAAACTGGAATCATCTGTCACTTCTTCAATAAATCCTGATTCACA
TCTGGGACAAATATATTCCGGTAGTTTGGGGCTGACCTCGCCCTTGCAAAAGTGGCAGAA
AAACCGGTGCGCGGCAACAGCGGCGCCTGCGCCGGCCCCGGCCGCCGAGGCCTCCGCCAT
TTTTCTCTCCCGGCGCCGCCGTCCGAGAGGGCAGCCGGCCCGTCGCTCCCCAGGCCGCTA
CCTCCCGGCTACAAGAGACGCCTCTGCCTCCGCCGCCGCCGCTTCTTCAGCGCAGCTGGC
CGCTCCAGAGTCCGCGCGGGTCACGTGAGCCCGCCCGGCCCACAAGGCGTCGGCGAGGAC
GGCGACCCCACGGCCCGCCTCCCGGCACCAAAGAGCTACAGGAAGGAGAGTCCGTCCGGC
GCTGCCCTCCCGCCGGCTCCTCTAACACCCCTCGCCGGTCCTCCAACCTCCCAGCGAGAA
GGAAGCAAGAGCGTCCCCGGAAACCACCGAAACGCTGGGGTAGAGCGGCACACGTTTTTC
CTCTTTGCTGACCCTCCTCGTTGGCCGGGCTCCTGCGCAAAAGGGCCTTGGGGTGCCTTC
TGCTCGAGCCGCTGGCTGGAGCCGCACGAGGTCGGCGGCGGCTTTAGATTGCATTGACCC
ACAGGTCTGAGACTCCTCAGTACAATGACTCAAGCAGAAATTAAACTGTGTTCTTTATTG
CTGCAAGACCTTTTGGAGAGATTGTAGAAAAATTGGAGTCACCTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTCANTGGCTCTATTATCTTGGTCCAGTAGACTGCTACTTAGAAAGGGTCTAAAATC
TTGGAAAAACATCGTGGGGTCCAAATGGTCCCAGAACTCTGCAAAATGTGTTGATGTACT
GCCGCCACCACCTAAAAAACTGGAATCATCTGTCACTTCTTCAATAAATCCTGATTCACA
TCTGGGACAAATATATTCCGGTAGTTTGGGGCTGACCTCGCCCTTGCAAAAGTGGCAGAA
AAACCGGTGCGCGGCAACAGCGGCGCCTGCGCCGGCCCCGGCCGCCGAGGCCTCCGCCAT
TTTTCTCTCCCGGCGCCGCCGTCCGAGAGGGCAGCCGGCCCGTCGCTCCCCAGGCCGCTA
CCTCCCGGCTACAAGAGACGCCTCTGCCTCCGCCGCCGCCGCTTCTTCAGCGCAGCTGGC
CGCTCCAGAGTCCGCGCGGGTCACGTGAGCCCGCCCGGCCCACAAGGCGTCGGCGAGGAC
GGCGACCCCACGGCCCGCCTCCCGGCACCAAAGAGCTACAGGAAGGAGAGTCCGTCCGGC
GCTGCCCTCCCGCCGGCTCCTCTAACACCCCTCGCCGGTCCTCCAACCTCCCAGCGAGAA
GGAAGCAAGAGCGTCCCCGGAAACCACCGAAACGCTGGGGTAGAGCGGCACACGTTTTTC
CTCTTTGCTGACCCTCCTCGTTGGCCGGGCTCCTGCGCAAAAGGGCCTTGGGGTGCCTTC
TGCTCGAGCCGCTGGCTGGAGCCGCACGAGGTCGGCGGCGGCTTTAGATTGCATTGACCC
ACAGGTCTGAGACTCCTCAGTACAATGACTCAAGCAGAAATTAAACTGTGTTCTTTATTG
CTGCAAGACCTTTTGGAGAGATTGTAGAAAAATTGGAGTCACCTATCA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-106, gnl|bosTau2|chr3 (15553762-15553656)
               

               
               1-106, gnl|Hg17|chr1 (143152298-143152194)
               

               
               1-106, gnl|Mm7|chr3 (96649675-96649578)
               


               
               198-844, gnl|bosTau2|chr3 (15513633-15512986)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-106, gnl|bosTau2|chr3 (15553762-15553656)
               

               
               1-106, gnl|Hg17|chr1 (143152298-143152194)
               

               
               1-106, gnl|Mm7|chr3 (96649675-96649578)
               


               
               198-844, gnl|bosTau2|chr3 (15513633-15512986)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	1-106, gnl\|bosTau2\|chr3 (15553762-15553656)
	1-106, gnl\|Hg17\|chr1 (143152298-143152194)
	1-106, gnl\|Mm7\|chr3 (96649675-96649578)

	198-844, gnl\|bosTau2\|chr3 (15513633-15512986)