Non-Coding RNA Search

Ss1.1-LyN2-AR048B08LN05KF07S.5

Sequence:


               
               CGGAGGGGTGCAGCCCGGCGTTGGGGAGCAGAAAGGACCCTCGAAGGGCTCTCCTGACGT
TGACAGTCGACGATTTAAAGCCCCGCTAGAATTTGTATGTGAAGCATCCCCAGACCCTTC
AGCCAACTCAACAGCAGCTACTTCTCTGTGACTGGGTCCTGTTAAGGTCCTCCCAAGAAA
GACTTCATTGGATCCACGCTCAAGAGGACTCTACCAGGTTTTCCTGACCCTTCTACATCG
CTATAAAGTGCCAAAGCCTTAAGATTTGGGTACGTGTGTTACAACGGCAAGAGGGCCAGC
GCCTACCAAAGACCCTTTGGACCCGCCAGCTCCTCCGTTTCACCAAGCAGATGTAATAAC
TTACCAGCAAAGCAGAGTAAGCCAGGTGCCTCTGCAGGATACCACCAGCCAATAACACAC
AAGAAAAAATAACTTAGACTAGAACCCTGTCTTTTCTTGAGAAGCTGGGATTTAAAGGAG
CTAGTCTGAGATCTGTGCTGCTAGTCAGTGGCTGATAACATCATAGACTGGATCAGTCCC
TCAGTTCAGAGACTGGGTTGCAAGTGAGTGAAAAATAGACAACGAAATCTTGAAGAAGTG
CATGGAGGTACAAGCCAGATATTACCCTCTCCGAGGAATGTTGGGTGGACTGAGAAATTG
CTAAGCCAAACCTGTGAGAGGACTGGTCATTCGGGTGTCTCTCTTTGTCGTTGTTACCTC
TTACTGTTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGGGGTGCAGCCCGGCGTTGGGGAGCAGAAAGGACCCTCGAAGGGCTCTCCTGACGT
TGACAGTCGACGATTTAAAGCCCCGCTAGAATTTGTATGTGAAGCATCCCCAGACCCTTC
AGCCAACTCAACAGCAGCTACTTCTCTGTGACTGGGTCCTGTTAAGGTCCTCCCAAGAAA
GACTTCATTGGATCCACGCTCAAGAGGACTCTACCAGGTTTTCCTGACCCTTCTACATCG
CTATAAAGTGCCAAAGCCTTAAGATTTGGGTACGTGTGTTACAACGGCAAGAGGGCCAGC
GCCTACCAAAGACCCTTTGGACCCGCCAGCTCCTCCGTTTCACCAAGCAGATGTAATAAC
TTACCAGCAAAGCAGAGTAAGCCAGGTGCCTCTGCAGGATACCACCAGCCAATAACACAC
AAGAAAAAATAACTTAGACTAGAACCCTGTCTTTTCTTGAGAAGCTGGGATTTAAAGGAG
CTAGTCTGAGATCTGTGCTGCTAGTCAGTGGCTGATAACATCATAGACTGGATCAGTCCC
TCAGTTCAGAGACTGGGTTGCAAGTGAGTGAAAAATAGACAACGAAATCTTGAAGAAGTG
CATGGAGGTACAAGCCAGATATTACCCTCTCCGAGGAATGTTGGGTGGACTGAGAAATTG
CTAAGCCAAACCTGTGAGAGGACTGGTCATTCGGGTGTCTCTCTTTGTCGTTGTTACCTC
TTACTGTTACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               523-640, + strand, RNAz p=0.927912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               523-640, + strand, RNAz p=0.927912

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               95-732, gnl|bosTau2|chr16 (45761093-45760460)
               

               
               95-732, gnl|Hg17|chr1 (176566646-176565998)
               

               
               95-732, gnl|Mm7|chr1 (156013184-156013740)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-732, gnl|bosTau2|chr16 (45761093-45760460)
               

               
               95-732, gnl|Hg17|chr1 (176566646-176565998)
               

               
               95-732, gnl|Mm7|chr1 (156013184-156013740)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	95-732, gnl\|bosTau2\|chr16 (45761093-45760460)
	95-732, gnl\|Hg17\|chr1 (176566646-176565998)
	95-732, gnl\|Mm7\|chr1 (156013184-156013740)