Ss1.1-LyN2-AR049E12LN05SB09R.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCAGNAGATCTTGCTTGTTGA------------------------------------ TGTTCCNGATGC------------TCAGGGCCTCCTGCAGGCGGTTGGTCTGGTTGTCCT CCCGAATGACCATGTTGTAGCTGCTGCTGGCGACCACGAAAATGATGGCGGTCACATCAT TGAAGCATTGGATCCATTTGCGGCGCTCGTCACGCTGGCCACCGACGTCAAACATGTGGA AGTTGACTTTGTCCACCTGGAACTTGGTCTCAAAGATTCCAGAAGTCAATTGGGCTAAGT TGTGCTATATTGACTCCCCAACTGATGGTGGAATTCCTTCTTACTGTTTTGCTTTAATGG TGATGTTTTTCCTACAACAAAGAAAACACCCTCTTCTTCCTTGCTTACTTGGAAGTTGGA ------------ATCCCAAAAAGAATGGATGACTTTCAGCTGAAGGGCATAGTAGAAGAG AAGTTTGTGAAGTGGGAATATAATTCAAGTAGTGCAACTGAGAAAAACTCAATTGCTGAG GAAAACAAAGCTAAGGCAGACCAACCAAAAGATGATACCAAGAAGACAGAAACAGACAAC CCAAGTAATGCCATGAAGGAAAAACATGGCAAATCTCCTTTAACTTTGGAAACACCCAAT CAGGTGTCCCTGGGACAGTTATGGTTAGAGCTGCTAAAATTTTATACACTGGATTTTGCT TTGGAGGAATATGTCATATGTGTACGGATACAAGATATTTTAAAAAAAAAAAAAAAAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCAGNAGATCTTGCTTGTTGA------------------------------------ TGTTCCNGATGC------------TCAGGGCCTCCTGCAGGCGGTTGGTCTGGTTGTCCT CCCGAATGACCATGTTGTAGCTGCTGCTGGCGACCACGAAAATGATGGCGGTCACATCAT TGAAGCATTGGATCCATTTGCGGCGCTCGTCACGCTGGCCACCGACGTCAAACATGTGGA AGTTGACTTTGTCCACCTGGAACTTGGTCTCAAAGATTCCAGAAGTCAATTGGGCTAAGT TGTGCTATATTGACTCCCCAACTGATGGTGGAATTCCTTCTTACTGTTTTGCTTTAATGG TGATGTTTTTCCTACAACAAAGAAAACACCCTCTTCTTCCTTGCTTACTTGGAAGTTGGA ------------ATCCCAAAAAGAATGGATGACTTTCAGCTGAAGGGCATAGTAGAAGAG AAGTTTGTGAAGTGGGAATATAATTCAAGTAGTGCAACTGAGAAAAACTCAATTGCTGAG GAAAACAAAGCTAAGGCAGACCAACCAAAAGATGATACCAAGAAGACAGAAACAGACAAC CCAAGTAATGCCATGAAGGAAAAACATGGCAAATCTCCTTTAACTTTGGAAACACCCAAT CAGGTGTCCCTGGGACAGTTATGGTTAGAGCTGCTAAAATTTTATACACTGGATTTTGCT TTGGAGGAATATGTCATATGTGTACGGATACAAGATATTTTAAAAAAAAAAAAAAAAAAC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 24-164, - strand, RNAz p=0.851492 | |
| 443-561, - strand, RNAz p=0.847859 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 24-164, - strand, RNAz p=0.851492 | |
| 443-561, - strand, RNAz p=0.847859 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 6-232, gnl|bosTau2|chr25 (38944846-38944615) | |
| 6-232, gnl|Hg17|chr7 (2544343-2544574) | |
| 6-232, gnl|Mm7|chr5 (139731794-139732025) | |
| 250-371, gnl|bosTau2|chr3 (62966839-62966960) | |
| 250-371, gnl|Hg17|chr1 (52659618-52659497) | |
| 250-371, gnl|Mm7|chr4 (107884344-107884465) | |
| 375-573, gnl|bosTau2|chr3 (62967154-62967352) | |
| 375-573, gnl|Hg17|chr1 (52659314-52659116) | |
| 375-573, gnl|Mm7|chr4 (107884674-107884872) | |
| 574-720, gnl|bosTau2|chr3 (62970323-62970469) | |
| 574-720, gnl|canFam2|chr15 (11913334-11913184) | |
| 574-720, gnl|danRer3|chrUn (71002818-71002966) | |
| 574-720, gnl|dasNov1|scaffold_83365 (5581-5731) | |
| 574-720, gnl|echTel1|scaffold_210822 (124-4) | |
| 574-720, gnl|fr1|chrUn (244831858-244832007) | |
| 574-720, gnl|galGal2|chr8 (24662072-24662222) | |
| 574-720, gnl|hg17|chr1 (52655396-52655546) | |
| 574-720, gnl|Hg17|chr1 (52655575-52655429) | |
| 574-720, gnl|loxAfr1|scaffold_865 (192974-192824) | |
| 574-720, gnl|mm7|chr4 (107888656-107888506) | |
| 574-720, gnl|Mm7|chr4 (107888475-107888621) | |
| 574-720, gnl|monDom2|scaffold_70 (1242049-1241899) | |
| 574-720, gnl|oryCun1|scaffold_59562 (2524-2374) | |
| 574-720, gnl|panTro1|chr1 (50880887-50881037) | |
| 574-720, gnl|rheMac2|chr1 (55312390-55312540) | |
| 574-720, gnl|rn3|chr17 (10777322-10777174) | |
| 574-720, gnl|tetNig1|chr12 (5647577-5647709) | |
| 574-720, gnl|xenTro1|scaffold_197 (274491-274642) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-232, gnl|bosTau2|chr25 (38944846-38944615) | |
| 6-232, gnl|Hg17|chr7 (2544343-2544574) | |
| 6-232, gnl|Mm7|chr5 (139731794-139732025) | |
| 250-371, gnl|bosTau2|chr3 (62966839-62966960) | |
| 250-371, gnl|Hg17|chr1 (52659618-52659497) | |
| 250-371, gnl|Mm7|chr4 (107884344-107884465) | |
| 375-573, gnl|bosTau2|chr3 (62967154-62967352) | |
| 375-573, gnl|Hg17|chr1 (52659314-52659116) | |
| 375-573, gnl|Mm7|chr4 (107884674-107884872) | |
| 574-720, gnl|bosTau2|chr3 (62970323-62970469) | |
| 574-720, gnl|canFam2|chr15 (11913334-11913184) | |
| 574-720, gnl|danRer3|chrUn (71002818-71002966) | |
| 574-720, gnl|dasNov1|scaffold_83365 (5581-5731) | |
| 574-720, gnl|echTel1|scaffold_210822 (124-4) | |
| 574-720, gnl|fr1|chrUn (244831858-244832007) | |
| 574-720, gnl|galGal2|chr8 (24662072-24662222) | |
| 574-720, gnl|hg17|chr1 (52655396-52655546) | |
| 574-720, gnl|Hg17|chr1 (52655575-52655429) | |
| 574-720, gnl|loxAfr1|scaffold_865 (192974-192824) | |
| 574-720, gnl|mm7|chr4 (107888656-107888506) | |
| 574-720, gnl|Mm7|chr4 (107888475-107888621) | |
| 574-720, gnl|monDom2|scaffold_70 (1242049-1241899) | |
| 574-720, gnl|oryCun1|scaffold_59562 (2524-2374) | |
| 574-720, gnl|panTro1|chr1 (50880887-50881037) | |
| 574-720, gnl|rheMac2|chr1 (55312390-55312540) | |
| 574-720, gnl|rn3|chr17 (10777322-10777174) | |
| 574-720, gnl|tetNig1|chr12 (5647577-5647709) | |
| 574-720, gnl|xenTro1|scaffold_197 (274491-274642) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) |