Ss1.1-LyN2-AR051B09LN05VB09S.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCACCCGCCTGCCCGCTCGGCCCTCTCCCGCCGCCTGCCCGCCCGCCGCCCTCCACATG CAGGCCGCCGTCGCCCTCCCCGAGGAGATCTGTTGGCTCCTGGAAGATGCTGAGGAGTTC CTGGCAGAAGGTTTGCGGAATGAGAACCTCAGTGCTCTTGCAAGGGACCACAGAGACCAT ATTCTACGGGGCTTTCAGCAAATCAAATCTAGGTACTTTTGGGATTTTCAGCCTCAAGGG GGAGACCAAGCTGAAAATTACCTTGGACAAGACAGCTCTGATGACAATCACAGTGGAACC CATGGCCCTTCCTTCACATCAGATGCAGCTTTTTTGCCAGATTATCAGGATGAGGGAATG GAAGACATCACAAGAGGAGCTCAAGAGCTTGATAATATCATCAAGCAAGGATACCTAGAG AAGAAAAGCAAAGATCATAGTTTTTTTGGATCAGAGTGGCAAAAGCGATGGTGTGTTGTC AGCAGAGGCCTCTTCTACTACTATGCTAATGAGAAAAGCAAGCAGCCCAAAGGGACCTTT CTCATTAAAGGCTACACTGTACGGATGGCCCCCTACCTGCGAAAAGATTCCAAGAAAGAA TGCTGCTTTGAGCTGACCTCCCAGGATAGACGCAGCTATGAGTTTACAGCTTCTAATCCA GCTGAAGCCAGAGACTGGGTGGATCAAATAAGTTTCTTGTTAAAGGATCTGAGCTCCTTA ACCATTCCATGTGAGGAGGAGGAGGAGGAGGGAGAGGAGGAAGAGGAAGAGATGTACGAT GATATCGATGGTTTTGACTCCTCAAATTCCGGTTCCCAAAGCAGACCCATCATGTTGCCT GGGAGTATGGGGCTCAAAGAGCCCACAGAGGAGAAAGAAGAAGATGATGTGGATGAAGTT TTACCAGATGAAGAGCTTGGTCTAGAAGAGGATGAGAATGGCACGCAACAAAAAGGAGTG GACTATGCCAATTATTACCAGGGCCTCTGGGATTGCCATGGTGACCAGCCAGACGAACTG TCCTTCCAACGGGGTGACATCATCCGAATTCTGAGCAAGGAGTATAACATGTATGGCTGG TGGGTAGGAGAAATGAACAGCCTCATTGGGATTGTTCCAAAGGAGTACCTCACCACTGCC TTTGAAGTGGAAGAAAGATGAAGCCCAGGACACCTGTCCTCTTCTCCCCCCTGCCTTTAT GAAGACACTGATCATCGAGAGCTCCCATTCCCCACCCCCGCCAGCCCACCAACAGGCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCACCCGCCTGCCCGCTCGGCCCTCTCCCGCCGCCTGCCCGCCCGCCGCCCTCCACATG CAGGCCGCCGTCGCCCTCCCCGAGGAGATCTGTTGGCTCCTGGAAGATGCTGAGGAGTTC CTGGCAGAAGGTTTGCGGAATGAGAACCTCAGTGCTCTTGCAAGGGACCACAGAGACCAT ATTCTACGGGGCTTTCAGCAAATCAAATCTAGGTACTTTTGGGATTTTCAGCCTCAAGGG GGAGACCAAGCTGAAAATTACCTTGGACAAGACAGCTCTGATGACAATCACAGTGGAACC CATGGCCCTTCCTTCACATCAGATGCAGCTTTTTTGCCAGATTATCAGGATGAGGGAATG GAAGACATCACAAGAGGAGCTCAAGAGCTTGATAATATCATCAAGCAAGGATACCTAGAG AAGAAAAGCAAAGATCATAGTTTTTTTGGATCAGAGTGGCAAAAGCGATGGTGTGTTGTC AGCAGAGGCCTCTTCTACTACTATGCTAATGAGAAAAGCAAGCAGCCCAAAGGGACCTTT CTCATTAAAGGCTACACTGTACGGATGGCCCCCTACCTGCGAAAAGATTCCAAGAAAGAA TGCTGCTTTGAGCTGACCTCCCAGGATAGACGCAGCTATGAGTTTACAGCTTCTAATCCA GCTGAAGCCAGAGACTGGGTGGATCAAATAAGTTTCTTGTTAAAGGATCTGAGCTCCTTA ACCATTCCATGTGAGGAGGAGGAGGAGGAGGGAGAGGAGGAAGAGGAAGAGATGTACGAT GATATCGATGGTTTTGACTCCTCAAATTCCGGTTCCCAAAGCAGACCCATCATGTTGCCT GGGAGTATGGGGCTCAAAGAGCCCACAGAGGAGAAAGAAGAAGATGATGTGGATGAAGTT TTACCAGATGAAGAGCTTGGTCTAGAAGAGGATGAGAATGGCACGCAACAAAAAGGAGTG GACTATGCCAATTATTACCAGGGCCTCTGGGATTGCCATGGTGACCAGCCAGACGAACTG TCCTTCCAACGGGGTGACATCATCCGAATTCTGAGCAAGGAGTATAACATGTATGGCTGG TGGGTAGGAGAAATGAACAGCCTCATTGGGATTGTTCCAAAGGAGTACCTCACCACTGCC TTTGAAGTGGAAGAAAGATGAAGCCCAGGACACCTGTCCTCTTCTCCCCCCTGCCTTTAT GAAGACACTGATCATCGAGAGCTCCCATTCCCCACCCCCGCCAGCCCACCAACAGGCCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 706-812, + strand, RNAz p=0.862194 | |
| 706-893, + strand, RNAz p=0.997135 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 706-812, + strand, RNAz p=0.862194 | |
| 706-893, + strand, RNAz p=0.997135 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 3-106, gnl|bosTau2|chr19 (30486356-30486256) | |
| 3-106, gnl|Hg17|chr17 (43862558-43862436) | |
| 3-106, gnl|Mm7|chr11 (96573664-96573789) | |
| 225-356, gnl|bosTau2|chr19 (41104267-41104137) | |
| 225-356, gnl|canFam2|chr9 (27945514-27945631) | |
| 225-356, gnl|dasNov1|scaffold_677 (139008-139107) | |
| 225-356, gnl|galGal2|chr27 (2435908-2435806) | |
| 225-356, gnl|hg17|chr17 (43778261-43778363) | |
| 225-356, gnl|Hg17|chr17 (43778380-43778265) | |
| 225-356, gnl|loxAfr1|scaffold_5583 (23272-23389) | |
| 225-356, gnl|mm7|chr11 (96650532-96650430) | |
| 225-356, gnl|Mm7|chr11 (96650411-96650526) | |
| 225-356, gnl|monDom2|scaffold_18 (45921582-45921465) | |
| 225-356, gnl|oryCun1|scaffold_209077 (215358-215256) | |
| 225-356, gnl|panTro1|chr19_random (42725672-42725774) | |
| 225-356, gnl|rheMac2|chr16 (32573589-32573691) | |
| 225-356, gnl|rn3|chr10 (85293345-85293243) | |
| 234-355, gnl|bosTau2|chr11 (11986622-11986743) | |
| 234-355, gnl|Hg17|chr17 (43778372-43778266) | |
| 234-355, gnl|Mm7|chr11 (96650387-96650525) | |
| 518-642, gnl|bosTau2|chr19 (41049023-41048899) | |
| 518-642, gnl|Hg17|chr17 (43617208-43617084) | |
| 518-642, gnl|Mm7|chr11 (96817605-96817729) | |
| 706-911, gnl|bosTau2|chr19 (41044404-41044190) | |
| 706-911, gnl|canFam2|chr9 (27781298-27781435) | |
| 706-911, gnl|dasNov1|scaffold_5999 (45091-45234) | |
| 706-911, gnl|echTel1|scaffold_313057 (69498-69355) | |
| 706-911, gnl|galGal2|chrUn (59824102-59823987) | |
| 706-911, gnl|hg17|chr17 (43612410-43612553) | |
| 706-911, gnl|Hg17|chr17 (43612610-43612411) | |
| 706-911, gnl|loxAfr1|scaffold_138 (83101-83244) | |
| 706-911, gnl|mm7|chr11 (96822248-96822129) | |
| 706-911, gnl|Mm7|chr11 (96822055-96822245) | |
| 706-911, gnl|monDom2|scaffold_18 (46157427-46157263) | |
| 706-911, gnl|oryCun1|scaffold_165762 (3976-3836) | |
| 706-911, gnl|panTro1|chr19_random (42551577-42551720) | |
| 706-911, gnl|rheMac2|chr16 (32403959-32404102) | |
| 706-911, gnl|rn3|chr10 (85477810-85477691) | |
| 706-911, gnl|tetNig1|chr2 (1398763-1398915) | |
| 1058-1169, gnl|bosTau2|chr19 (41006609-41006498) | |
| 1058-1169, gnl|Hg17|chr17 (43569700-43569589) | |
| 1058-1169, gnl|Mm7|chr11 (96863068-96863179) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-106, gnl|bosTau2|chr19 (30486356-30486256) | |
| 3-106, gnl|Hg17|chr17 (43862558-43862436) | |
| 3-106, gnl|Mm7|chr11 (96573664-96573789) | |
| 225-356, gnl|bosTau2|chr19 (41104267-41104137) | |
| 225-356, gnl|canFam2|chr9 (27945514-27945631) | |
| 225-356, gnl|dasNov1|scaffold_677 (139008-139107) | |
| 225-356, gnl|galGal2|chr27 (2435908-2435806) | |
| 225-356, gnl|hg17|chr17 (43778261-43778363) | |
| 225-356, gnl|Hg17|chr17 (43778380-43778265) | |
| 225-356, gnl|loxAfr1|scaffold_5583 (23272-23389) | |
| 225-356, gnl|mm7|chr11 (96650532-96650430) | |
| 225-356, gnl|Mm7|chr11 (96650411-96650526) | |
| 225-356, gnl|monDom2|scaffold_18 (45921582-45921465) | |
| 225-356, gnl|oryCun1|scaffold_209077 (215358-215256) | |
| 225-356, gnl|panTro1|chr19_random (42725672-42725774) | |
| 225-356, gnl|rheMac2|chr16 (32573589-32573691) | |
| 225-356, gnl|rn3|chr10 (85293345-85293243) | |
| 234-355, gnl|bosTau2|chr11 (11986622-11986743) | |
| 234-355, gnl|Hg17|chr17 (43778372-43778266) | |
| 234-355, gnl|Mm7|chr11 (96650387-96650525) | |
| 518-642, gnl|bosTau2|chr19 (41049023-41048899) | |
| 518-642, gnl|Hg17|chr17 (43617208-43617084) | |
| 518-642, gnl|Mm7|chr11 (96817605-96817729) | |
| 706-911, gnl|bosTau2|chr19 (41044404-41044190) | |
| 706-911, gnl|canFam2|chr9 (27781298-27781435) | |
| 706-911, gnl|dasNov1|scaffold_5999 (45091-45234) | |
| 706-911, gnl|echTel1|scaffold_313057 (69498-69355) | |
| 706-911, gnl|galGal2|chrUn (59824102-59823987) | |
| 706-911, gnl|hg17|chr17 (43612410-43612553) | |
| 706-911, gnl|Hg17|chr17 (43612610-43612411) | |
| 706-911, gnl|loxAfr1|scaffold_138 (83101-83244) | |
| 706-911, gnl|mm7|chr11 (96822248-96822129) | |
| 706-911, gnl|Mm7|chr11 (96822055-96822245) | |
| 706-911, gnl|monDom2|scaffold_18 (46157427-46157263) | |
| 706-911, gnl|oryCun1|scaffold_165762 (3976-3836) | |
| 706-911, gnl|panTro1|chr19_random (42551577-42551720) | |
| 706-911, gnl|rheMac2|chr16 (32403959-32404102) | |
| 706-911, gnl|rn3|chr10 (85477810-85477691) | |
| 706-911, gnl|tetNig1|chr2 (1398763-1398915) | |
| 1058-1169, gnl|bosTau2|chr19 (41006609-41006498) | |
| 1058-1169, gnl|Hg17|chr17 (43569700-43569589) | |
| 1058-1169, gnl|Mm7|chr11 (96863068-96863179) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) |