Ss1.1-LyN2-AR053D12LN05XD12S.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGACATTGTGGAGGGGCAGACGGTCACCTGGATGGGCCTCTTCTACTGCCCGCTGCT GCCCCTGCTCAACAGCGTCTTCATCTTCCTCACTTTCTACATCAAGAAGTACACCCTGCT GAGGAACTCCAGGGCCTCCGTTCGGCGATTCCGAGCCTCCAGCTCCCTCTTCTTCTTCCA GCTGGTGCTCGTCCTGGGCCTGCTCCTGGCCACCGTGCCCTTGGGCTATGTGGTCAGCAG CATCCACTCCTCCTGGAACTGTGGCCTCTTCACCAACTACTCGGCCCCCTGGCAGGTGGT GCCAGAGCTGGTGACCCTCTGGCTCCCGCCCCTCGGCCAGCACATCCTCCACTACCTGGG CTCCCACGCCTTCAGCCTCCCTCTCCTCATCCTGCTCAGCCTTGGTCTGACGGTGTGCGT CTCCCAGACCCAAGCCAATGCAAGAGCCATCCGGGGGCTCCGGAAGCAGCTGGTGTGGCA AGTCCAGGAGAAGTGGCACCTGGTGGATGACCTGTCGCGGCTGCTGCCTGAGCCCGGCCT TGGCGACTCTCTGGGGCCTGAGTCCCCTCTCTCCCGAGGTTCGCGCTTGAGATTCTTCTG CCCCGGATCCCCCTGCCCGGGCTCCCCAGGACCGGGGTCCCCCAGGCCGGGACCCTCCCT TTGATTCCGCTTCCCCAGTGGTTCCGAGCTGTAGCACCGGCCCCCACCTCTTCCCAGAGC CTCCCCAGGGCCCCCGTTGCAGCTCCCTGGTGACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGACATTGTGGAGGGGCAGACGGTCACCTGGATGGGCCTCTTCTACTGCCCGCTGCT GCCCCTGCTCAACAGCGTCTTCATCTTCCTCACTTTCTACATCAAGAAGTACACCCTGCT GAGGAACTCCAGGGCCTCCGTTCGGCGATTCCGAGCCTCCAGCTCCCTCTTCTTCTTCCA GCTGGTGCTCGTCCTGGGCCTGCTCCTGGCCACCGTGCCCTTGGGCTATGTGGTCAGCAG CATCCACTCCTCCTGGAACTGTGGCCTCTTCACCAACTACTCGGCCCCCTGGCAGGTGGT GCCAGAGCTGGTGACCCTCTGGCTCCCGCCCCTCGGCCAGCACATCCTCCACTACCTGGG CTCCCACGCCTTCAGCCTCCCTCTCCTCATCCTGCTCAGCCTTGGTCTGACGGTGTGCGT CTCCCAGACCCAAGCCAATGCAAGAGCCATCCGGGGGCTCCGGAAGCAGCTGGTGTGGCA AGTCCAGGAGAAGTGGCACCTGGTGGATGACCTGTCGCGGCTGCTGCCTGAGCCCGGCCT TGGCGACTCTCTGGGGCCTGAGTCCCCTCTCTCCCGAGGTTCGCGCTTGAGATTCTTCTG CCCCGGATCCCCCTGCCCGGGCTCCCCAGGACCGGGGTCCCCCAGGCCGGGACCCTCCCT TTGATTCCGCTTCCCCAGTGGTTCCGAGCTGTAGCACCGGCCCCCACCTCTTCCCAGAGC CTCCCCAGGGCCCCCGTTGCAGCTCCCTGGTGACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 238-399, - strand, RNAz p=0.969482 | |
| 238-327, - strand, RNAz p=0.737688 | |
| 547-661, - strand, RNAz p=0.996606 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 238-399, - strand, RNAz p=0.969482 | |
| 238-327, - strand, RNAz p=0.737688 | |
| 547-661, - strand, RNAz p=0.996606 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr19 (47891915-47891807) | |
| 1-109, gnl|canFam2|chr9 (5990316-5990173) | |
| 1-109, gnl|danRer3|chr21 (11809806-11809676) | |
| 1-109, gnl|echTel1|scaffold_62219 (4-146) | |
| 1-109, gnl|fr1|chrUn (79823164-79823034) | |
| 1-109, gnl|hg17|chr17 (73645745-73645887) | |
| 1-109, gnl|Hg17|chr17 (73645756-73645864) | |
| 1-109, gnl|loxAfr1|scaffold_104042 (581-728) | |
| 1-109, gnl|mm7|chr11 (117900017-117900142) | |
| 1-109, gnl|Mm7|chr11 (117900028-117900136) | |
| 1-109, gnl|monDom2|scaffold_18 (6962660-6962802) | |
| 1-109, gnl|oryCun1|scaffold_145328 (2747-2880) | |
| 1-109, gnl|panTro1|chr19 (77191151-77191293) | |
| 1-109, gnl|rheMac2|chr16 (73432051-73432193) | |
| 1-109, gnl|rn3|chr1 (63939481-63939615) | |
| 1-109, gnl|tetNig1|chr18 (2186702-2186838) | |
| 238-399, gnl|bosTau2|chr19 (47891374-47891213) | |
| 238-399, gnl|canFam2|chr9 (5989821-5989646) | |
| 238-399, gnl|danRer3|chr21 (11809212-11809078) | |
| 238-399, gnl|dasNov1|scaffold_96729 (4387-4212) | |
| 238-399, gnl|echTel1|scaffold_62219 (507-684) | |
| 238-399, gnl|hg17|chr17 (73646236-73646411) | |
| 238-399, gnl|Hg17|chr17 (73646247-73646408) | |
| 238-399, gnl|loxAfr1|scaffold_55084 (3828-4002) | |
| 238-399, gnl|mm7|chr11 (117900469-117900649) | |
| 238-399, gnl|Mm7|chr11 (117900485-117900646) | |
| 238-399, gnl|monDom2|scaffold_18 (6963984-6964158) | |
| 238-399, gnl|oryCun1|scaffold_145328 (3659-3832) | |
| 238-399, gnl|panTro1|chr19 (77191641-77191816) | |
| 238-399, gnl|rheMac2|chr16 (73432530-73432705) | |
| 238-399, gnl|rn3|chr1 (63940105-63940276) | |
| 478-661, gnl|bosTau2|chr19 (47890119-47889936) | |
| 478-661, gnl|Hg17|chr17 (73648509-73648692) | |
| 478-661, gnl|Mm7|chr11 (117901582-117901758) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr19 (47891915-47891807) | |
| 1-109, gnl|canFam2|chr9 (5990316-5990173) | |
| 1-109, gnl|danRer3|chr21 (11809806-11809676) | |
| 1-109, gnl|echTel1|scaffold_62219 (4-146) | |
| 1-109, gnl|fr1|chrUn (79823164-79823034) | |
| 1-109, gnl|hg17|chr17 (73645745-73645887) | |
| 1-109, gnl|Hg17|chr17 (73645756-73645864) | |
| 1-109, gnl|loxAfr1|scaffold_104042 (581-728) | |
| 1-109, gnl|mm7|chr11 (117900017-117900142) | |
| 1-109, gnl|Mm7|chr11 (117900028-117900136) | |
| 1-109, gnl|monDom2|scaffold_18 (6962660-6962802) | |
| 1-109, gnl|oryCun1|scaffold_145328 (2747-2880) | |
| 1-109, gnl|panTro1|chr19 (77191151-77191293) | |
| 1-109, gnl|rheMac2|chr16 (73432051-73432193) | |
| 1-109, gnl|rn3|chr1 (63939481-63939615) | |
| 1-109, gnl|tetNig1|chr18 (2186702-2186838) | |
| 238-399, gnl|bosTau2|chr19 (47891374-47891213) | |
| 238-399, gnl|canFam2|chr9 (5989821-5989646) | |
| 238-399, gnl|danRer3|chr21 (11809212-11809078) | |
| 238-399, gnl|dasNov1|scaffold_96729 (4387-4212) | |
| 238-399, gnl|echTel1|scaffold_62219 (507-684) | |
| 238-399, gnl|hg17|chr17 (73646236-73646411) | |
| 238-399, gnl|Hg17|chr17 (73646247-73646408) | |
| 238-399, gnl|loxAfr1|scaffold_55084 (3828-4002) | |
| 238-399, gnl|mm7|chr11 (117900469-117900649) | |
| 238-399, gnl|Mm7|chr11 (117900485-117900646) | |
| 238-399, gnl|monDom2|scaffold_18 (6963984-6964158) | |
| 238-399, gnl|oryCun1|scaffold_145328 (3659-3832) | |
| 238-399, gnl|panTro1|chr19 (77191641-77191816) | |
| 238-399, gnl|rheMac2|chr16 (73432530-73432705) | |
| 238-399, gnl|rn3|chr1 (63940105-63940276) | |
| 478-661, gnl|bosTau2|chr19 (47890119-47889936) | |
| 478-661, gnl|Hg17|chr17 (73648509-73648692) | |
| 478-661, gnl|Mm7|chr11 (117901582-117901758) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| cly (0.241284) | |
| med (0.116252) |