Non-Coding RNA Search

Ss1.1-LyN2-AR055B04LN05LE02T.5

Sequence:


               
               TTTAACATTCTGAATGACTCAATACTTGTAATCTCTGTGTGTATATGAAACACTGTGCCA
TATTTCCCAACTTTACCTAGGTGCCATTGTATATAAGAAAGGACAGCTATTTTGATCTCC
ATCAGCATTGCCTTCATCTGGAAATCTGAGAACAGTTCACAGTAAACCTCTCAGCAGTTT
GAAGTACCTGCAGAAACCATAGCTATTCACCAAAATACACAGACTGGGTGCATGGTATCA
TGGAAATTAATTTGGTAAAACAAACAACACACACACAAATTTGTGTACTCTGTTTTCAGT
AACATCTACAGGTACAGCTTTGACTTTGAACAGAATTACAAGTAATTTGCTGTTGTACCC
ACCAGATTATAGAAAATGTGAATTAAAGTAAATGTTTCTGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAACATTCTGAATGACTCAATACTTGTAATCTCTGTGTGTATATGAAACACTGTGCCA
TATTTCCCAACTTTACCTAGGTGCCATTGTATATAAGAAAGGACAGCTATTTTGATCTCC
ATCAGCATTGCCTTCATCTGGAAATCTGAGAACAGTTCACAGTAAACCTCTCAGCAGTTT
GAAGTACCTGCAGAAACCATAGCTATTCACCAAAATACACAGACTGGGTGCATGGTATCA
TGGAAATTAATTTGGTAAAACAAACAACACACACACAAATTTGTGTACTCTGTTTTCAGT
AACATCTACAGGTACAGCTTTGACTTTGAACAGAATTACAAGTAATTTGCTGTTGTACCC
ACCAGATTATAGAAAATGTGAATTAAAGTAAATGTTTCTGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-156, + strand, RNAz p=0.881743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-156, + strand, RNAz p=0.881743

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-403, gnl|bosTau2|chr28 (4398996-4398578)
               

               
               1-403, gnl|canFam2|chr4 (6816466-6816142)
               

               
               1-403, gnl|echTel1|scaffold_297959 (13512-13812)
               

               
               1-403, gnl|hg17|chr1 (232704795-232705137)
               

               
               1-403, gnl|Hg17|chr1 (232705300-232704896)
               

               
               1-403, gnl|loxAfr1|scaffold_1251 (137309-136988)
               

               
               1-403, gnl|mm7|chrUn_random (10121740-10122083)
               

               
               1-403, gnl|Mm7|chrUn_random (10122186-10121838)
               

               
               1-403, gnl|monDom2|scaffold_13 (49187453-49187183)
               

               
               1-403, gnl|oryCun1|scaffold_175262 (92005-92342)
               

               
               1-403, gnl|panTro1|chr1 (216536150-216536492)
               

               
               1-403, gnl|rn3|chr17 (67022936-67023277)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-403, gnl|bosTau2|chr28 (4398996-4398578)
               

               
               1-403, gnl|canFam2|chr4 (6816466-6816142)
               

               
               1-403, gnl|echTel1|scaffold_297959 (13512-13812)
               

               
               1-403, gnl|hg17|chr1 (232704795-232705137)
               

               
               1-403, gnl|Hg17|chr1 (232705300-232704896)
               

               
               1-403, gnl|loxAfr1|scaffold_1251 (137309-136988)
               

               
               1-403, gnl|mm7|chrUn_random (10121740-10122083)
               

               
               1-403, gnl|Mm7|chrUn_random (10122186-10121838)
               

               
               1-403, gnl|monDom2|scaffold_13 (49187453-49187183)
               

               
               1-403, gnl|oryCun1|scaffold_175262 (92005-92342)
               

               
               1-403, gnl|panTro1|chr1 (216536150-216536492)
               

               
               1-403, gnl|rn3|chr17 (67022936-67023277)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (0.415628)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               cly (0.120642)

	1-403, gnl\|bosTau2\|chr28 (4398996-4398578)
	1-403, gnl\|canFam2\|chr4 (6816466-6816142)
	1-403, gnl\|echTel1\|scaffold_297959 (13512-13812)
	1-403, gnl\|hg17\|chr1 (232704795-232705137)
	1-403, gnl\|Hg17\|chr1 (232705300-232704896)
	1-403, gnl\|loxAfr1\|scaffold_1251 (137309-136988)
	1-403, gnl\|mm7\|chrUn_random (10121740-10122083)
	1-403, gnl\|Mm7\|chrUn_random (10122186-10121838)
	1-403, gnl\|monDom2\|scaffold_13 (49187453-49187183)
	1-403, gnl\|oryCun1\|scaffold_175262 (92005-92342)
	1-403, gnl\|panTro1\|chr1 (216536150-216536492)
	1-403, gnl\|rn3\|chr17 (67022936-67023277)

	tes (0.415628)
	aor (0.195274)
	fhi (0.169578)
	fco (0.157208)
	lnt (0.142308)
	lyg (0.133103)
	cly (0.120642)