Non-Coding RNA Search

Ss1.1-LyN3-AR091E10LNBE10S.5

Sequence:


               
               GCCCATCATAACAAATGCTTCAGAAACACTTAAATAAAAACTTTTGCTTGTGTGATGGTG
CAGTCATTTTACTGGACCAAATCACCCACCTTGACTATACCAAGGCATCATGTATCCACA
GTTCTAGCCTAATTTTATGCTGATTTCCCCCACCTCTTCTCAGTTTCCTCCTTTGTATGC
TCCAAATAACTTAATCAAACTGAGTTGTGGCATTCTCCATGCAGCCTCCTTGTGACAGCA
GCTCACTGCTTGAAGTGACGTGAACCACTGAGGCACATCGTTGAATTGATGTGAGCATTA
AAACATTACCACACACAGCCCTTCCCTGAGGCAGCGGGAGCTGGTGTATTCTGGAGACGT
TGTTGAACTTCAACTGGGTAACACCCAGACCACCCCAGGTCTCCATTATGGGATGTCCTG
ACGTTTAACACAGGTGGAATGAGCTTCCTCCTTGGAAGATAGAAGACCATGTTCATGGCC
GACACTGGCCTTTCCTTTCAGCCTCTTTCTTATGACTTGGAACAACATTTCAATAGTGGT
GGTTATTGTGGAACTAGCCAACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCATCATAACAAATGCTTCAGAAACACTTAAATAAAAACTTTTGCTTGTGTGATGGTG
CAGTCATTTTACTGGACCAAATCACCCACCTTGACTATACCAAGGCATCATGTATCCACA
GTTCTAGCCTAATTTTATGCTGATTTCCCCCACCTCTTCTCAGTTTCCTCCTTTGTATGC
TCCAAATAACTTAATCAAACTGAGTTGTGGCATTCTCCATGCAGCCTCCTTGTGACAGCA
GCTCACTGCTTGAAGTGACGTGAACCACTGAGGCACATCGTTGAATTGATGTGAGCATTA
AAACATTACCACACACAGCCCTTCCCTGAGGCAGCGGGAGCTGGTGTATTCTGGAGACGT
TGTTGAACTTCAACTGGGTAACACCCAGACCACCCCAGGTCTCCATTATGGGATGTCCTG
ACGTTTAACACAGGTGGAATGAGCTTCCTCCTTGGAAGATAGAAGACCATGTTCATGGCC
GACACTGGCCTTTCCTTTCAGCCTCTTTCTTATGACTTGGAACAACATTTCAATAGTGGT
GGTTATTGTGGAACTAGCCAACGG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-524, gnl|bosTau2|chr21 (1833376-1832851)
               

               
               1-524, gnl|canFam2|chr3 (44951157-44951652)
               

               
               1-524, gnl|dasNov1|scaffold_288576 (832-1324)
               

               
               1-524, gnl|echTel1|scaffold_322027 (226050-226536)
               

               
               1-524, gnl|galGal2|chr10 (17288339-17287804)
               

               
               1-524, gnl|hg17|chr15 (97322088-97322558)
               

               
               1-524, gnl|Hg17|chr15 (97322123-97322640)
               

               
               1-524, gnl|loxAfr1|scaffold_123493 (7384-7862)
               

               
               1-524, gnl|mm7|chr7 (64086331-64086824)
               

               
               1-524, gnl|Mm7|chr7 (64086383-64086902)
               

               
               1-524, gnl|monDom2|scaffold_12 (62336084-62336572)
               

               
               1-524, gnl|oryCun1|scaffold_117896 (7540-7989)
               

               
               1-524, gnl|panTro1|chr16 (98388204-98388660)
               

               
               1-524, gnl|rheMac2|chr7 (78970828-78971319)
               

               
               1-524, gnl|rn3|chr1 (123071798-123072277)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-524, gnl|bosTau2|chr21 (1833376-1832851)
               

               
               1-524, gnl|canFam2|chr3 (44951157-44951652)
               

               
               1-524, gnl|dasNov1|scaffold_288576 (832-1324)
               

               
               1-524, gnl|echTel1|scaffold_322027 (226050-226536)
               

               
               1-524, gnl|galGal2|chr10 (17288339-17287804)
               

               
               1-524, gnl|hg17|chr15 (97322088-97322558)
               

               
               1-524, gnl|Hg17|chr15 (97322123-97322640)
               

               
               1-524, gnl|loxAfr1|scaffold_123493 (7384-7862)
               

               
               1-524, gnl|mm7|chr7 (64086331-64086824)
               

               
               1-524, gnl|Mm7|chr7 (64086383-64086902)
               

               
               1-524, gnl|monDom2|scaffold_12 (62336084-62336572)
               

               
               1-524, gnl|oryCun1|scaffold_117896 (7540-7989)
               

               
               1-524, gnl|panTro1|chr16 (98388204-98388660)
               

               
               1-524, gnl|rheMac2|chr7 (78970828-78971319)
               

               
               1-524, gnl|rn3|chr1 (123071798-123072277)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-524, gnl\|bosTau2\|chr21 (1833376-1832851)
	1-524, gnl\|canFam2\|chr3 (44951157-44951652)
	1-524, gnl\|dasNov1\|scaffold_288576 (832-1324)
	1-524, gnl\|echTel1\|scaffold_322027 (226050-226536)
	1-524, gnl\|galGal2\|chr10 (17288339-17287804)
	1-524, gnl\|hg17\|chr15 (97322088-97322558)
	1-524, gnl\|Hg17\|chr15 (97322123-97322640)
	1-524, gnl\|loxAfr1\|scaffold_123493 (7384-7862)
	1-524, gnl\|mm7\|chr7 (64086331-64086824)
	1-524, gnl\|Mm7\|chr7 (64086383-64086902)
	1-524, gnl\|monDom2\|scaffold_12 (62336084-62336572)
	1-524, gnl\|oryCun1\|scaffold_117896 (7540-7989)
	1-524, gnl\|panTro1\|chr16 (98388204-98388660)
	1-524, gnl\|rheMac2\|chr7 (78970828-78971319)
	1-524, gnl\|rn3\|chr1 (123071798-123072277)