Ss1.1-LyN3-AR091G08LNBG08S.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCGGCCAGCCACTTTCATGTCCTCTGACCTCTAAATGGGAGGCTTTGGAGAAAGAAG AGAAGTTGGAGAAGATGACAGCTCCTGCCTGGAGTGGCAGTGGACTGAAAGGCCAGAGAA AGTTGTCTGATTCACAAAAAGATGACATGACAGCCAGGAGAACTGGGATGTTTCTTAGAC ACACTGGATCCAACCCAAACCAGTTCCTTCCAGTTCCATTTGCAAAGCAACACAGTATGG AGGACTCTGCCAAGGGCCCACCAATAAAAGATAAGAGATACGGACCGAGAACTCCTGTGT CTGATGACGCAGAGAGCACCAGTATGTTTGACATGCGGTGTGAGGAGGAGGCCGCGGTGC AGCCGCACAGCAGGGCCCGCCAGGAGCAGCTGCAGCTGATAAATAACCAGCTGCGGGAAG AGGACGACAAATGGCAAGATGACCTGGCTCGTTGGAAAAGCCGGAGAAGAAGTGCTTCTC AGGACTTAATCAAGAAAGAGGAAGAAAGGAAAAAAATGGAGAAGTTACTGGCTGGAGAGG ATGGGACACGTGAACGAAGGAAAAGCATCAAAACCTACAGAGAAATTGTCCAAGAAAAAG AGCGGAGAGAGAGGGAGTTGCATGAGGCGTACAAGAACGCACGGTCCCAGGAGGAGGCGG AAGGGATCCTTCAGCAGTATATCG------------TCAGCGAAGCTGTTCTCGAACGTT TGGAGATGCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCGGCCAGCCACTTTCATGTCCTCTGACCTCTAAATGGGAGGCTTTGGAGAAAGAAG AGAAGTTGGAGAAGATGACAGCTCCTGCCTGGAGTGGCAGTGGACTGAAAGGCCAGAGAA AGTTGTCTGATTCACAAAAAGATGACATGACAGCCAGGAGAACTGGGATGTTTCTTAGAC ACACTGGATCCAACCCAAACCAGTTCCTTCCAGTTCCATTTGCAAAGCAACACAGTATGG AGGACTCTGCCAAGGGCCCACCAATAAAAGATAAGAGATACGGACCGAGAACTCCTGTGT CTGATGACGCAGAGAGCACCAGTATGTTTGACATGCGGTGTGAGGAGGAGGCCGCGGTGC AGCCGCACAGCAGGGCCCGCCAGGAGCAGCTGCAGCTGATAAATAACCAGCTGCGGGAAG AGGACGACAAATGGCAAGATGACCTGGCTCGTTGGAAAAGCCGGAGAAGAAGTGCTTCTC AGGACTTAATCAAGAAAGAGGAAGAAAGGAAAAAAATGGAGAAGTTACTGGCTGGAGAGG ATGGGACACGTGAACGAAGGAAAAGCATCAAAACCTACAGAGAAATTGTCCAAGAAAAAG AGCGGAGAGAGAGGGAGTTGCATGAGGCGTACAAGAACGCACGGTCCCAGGAGGAGGCGG AAGGGATCCTTCAGCAGTATATCG------------TCAGCGAAGCTGTTCTCGAACGTT TGGAGATGCCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 23-140, + strand, RNAz p=0.957013 | |
| 441-559, + strand, RNAz p=0.86998 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 23-140, + strand, RNAz p=0.957013 | |
| 441-559, + strand, RNAz p=0.86998 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 23-277, gnl|bosTau2|chr6 (30982693-30982945) | |
| 23-277, gnl|Hg17|chr4 (41476499-41476753) | |
| 23-277, gnl|Mm7|chr5 (66343996-66344219) | |
| 441-598, gnl|bosTau2|chr6 (30993970-30994127) | |
| 441-598, gnl|canFam2|chr13 (41807648-41807838) | |
| 441-598, gnl|danRer3|chr1 (15046307-15046471) | |
| 441-598, gnl|dasNov1|scaffold_307 (112425-112247) | |
| 441-598, gnl|echTel1|scaffold_305023 (46537-46363) | |
| 441-598, gnl|fr1|chrUn (69291747-69291558) | |
| 441-598, gnl|galGal2|chr4 (68959841-68959665) | |
| 441-598, gnl|hg17|chr4 (41489052-41489231) | |
| 441-598, gnl|Hg17|chr4 (41489068-41489225) | |
| 441-598, gnl|loxAfr1|scaffold_12905 (36868-36694) | |
| 441-598, gnl|mm7|chr5 (66354153-66354333) | |
| 441-598, gnl|Mm7|chr5 (66354170-66354327) | |
| 441-598, gnl|monDom2|scaffold_26 (7019446-7019625) | |
| 441-598, gnl|oryCun1|scaffold_210433 (51201-51026) | |
| 441-598, gnl|panTro1|chr3 (44174652-44174831) | |
| 441-598, gnl|rheMac2|chr5 (36692852-36693031) | |
| 441-598, gnl|rn3|chr14 (43773135-43772955) | |
| 441-598, gnl|tetNig1|chr20 (1955460-1955295) | |
| 441-598, gnl|xenTro1|scaffold_84 (1255718-1255541) | |
| 599-720, gnl|bosTau2|chr6 (30994333-30994466) | |
| 599-720, gnl|canFam2|chr13 (41808002-41808268) | |
| 599-720, gnl|danRer3|chr1 (15048027-15048335) | |
| 599-720, gnl|dasNov1|scaffold_307 (112072-111823) | |
| 599-720, gnl|echTel1|scaffold_305023 (46213-45945) | |
| 599-720, gnl|fr1|chrUn (69291503-69291194) | |
| 599-720, gnl|galGal2|chr4 (68959518-68959258) | |
| 599-720, gnl|hg17|chr4 (41489406-41489665) | |
| 599-720, gnl|Hg17|chr4 (41489430-41489563) | |
| 599-720, gnl|loxAfr1|scaffold_12905 (36511-36243) | |
| 599-720, gnl|mm7|chr5 (66354476-66354738) | |
| 599-720, gnl|Mm7|chr5 (66354503-66354636) | |
| 599-720, gnl|monDom2|scaffold_26 (7020228-7020487) | |
| 599-720, gnl|oryCun1|scaffold_210433 (50867-50601) | |
| 599-720, gnl|panTro1|chr3 (44175006-44175265) | |
| 599-720, gnl|rheMac2|chr5 (36693205-36693468) | |
| 599-720, gnl|rn3|chr14 (43772827-43772566) | |
| 599-720, gnl|tetNig1|chr20 (1955235-1954940) | |
| 599-720, gnl|xenTro1|scaffold_84 (1253212-1252949) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-277, gnl|bosTau2|chr6 (30982693-30982945) | |
| 23-277, gnl|Hg17|chr4 (41476499-41476753) | |
| 23-277, gnl|Mm7|chr5 (66343996-66344219) | |
| 441-598, gnl|bosTau2|chr6 (30993970-30994127) | |
| 441-598, gnl|canFam2|chr13 (41807648-41807838) | |
| 441-598, gnl|danRer3|chr1 (15046307-15046471) | |
| 441-598, gnl|dasNov1|scaffold_307 (112425-112247) | |
| 441-598, gnl|echTel1|scaffold_305023 (46537-46363) | |
| 441-598, gnl|fr1|chrUn (69291747-69291558) | |
| 441-598, gnl|galGal2|chr4 (68959841-68959665) | |
| 441-598, gnl|hg17|chr4 (41489052-41489231) | |
| 441-598, gnl|Hg17|chr4 (41489068-41489225) | |
| 441-598, gnl|loxAfr1|scaffold_12905 (36868-36694) | |
| 441-598, gnl|mm7|chr5 (66354153-66354333) | |
| 441-598, gnl|Mm7|chr5 (66354170-66354327) | |
| 441-598, gnl|monDom2|scaffold_26 (7019446-7019625) | |
| 441-598, gnl|oryCun1|scaffold_210433 (51201-51026) | |
| 441-598, gnl|panTro1|chr3 (44174652-44174831) | |
| 441-598, gnl|rheMac2|chr5 (36692852-36693031) | |
| 441-598, gnl|rn3|chr14 (43773135-43772955) | |
| 441-598, gnl|tetNig1|chr20 (1955460-1955295) | |
| 441-598, gnl|xenTro1|scaffold_84 (1255718-1255541) | |
| 599-720, gnl|bosTau2|chr6 (30994333-30994466) | |
| 599-720, gnl|canFam2|chr13 (41808002-41808268) | |
| 599-720, gnl|danRer3|chr1 (15048027-15048335) | |
| 599-720, gnl|dasNov1|scaffold_307 (112072-111823) | |
| 599-720, gnl|echTel1|scaffold_305023 (46213-45945) | |
| 599-720, gnl|fr1|chrUn (69291503-69291194) | |
| 599-720, gnl|galGal2|chr4 (68959518-68959258) | |
| 599-720, gnl|hg17|chr4 (41489406-41489665) | |
| 599-720, gnl|Hg17|chr4 (41489430-41489563) | |
| 599-720, gnl|loxAfr1|scaffold_12905 (36511-36243) | |
| 599-720, gnl|mm7|chr5 (66354476-66354738) | |
| 599-720, gnl|Mm7|chr5 (66354503-66354636) | |
| 599-720, gnl|monDom2|scaffold_26 (7020228-7020487) | |
| 599-720, gnl|oryCun1|scaffold_210433 (50867-50601) | |
| 599-720, gnl|panTro1|chr3 (44175006-44175265) | |
| 599-720, gnl|rheMac2|chr5 (36693205-36693468) | |
| 599-720, gnl|rn3|chr14 (43772827-43772566) | |
| 599-720, gnl|tetNig1|chr20 (1955235-1954940) | |
| 599-720, gnl|xenTro1|scaffold_84 (1253212-1252949) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |