Non-Coding RNA Search

Ss1.1-LyN3-AR093E02LNDE02S.5

Sequence:


               
               GTTTTTCCTGTCACTGGTGATCATGGTGGCAGAGTCGGTAGCATGGAACATGACCCTGGA
CCCAGTAAAAGAAACCTTTTGGTGCCAGGTTTTTACAAGAGGGGTCTGGATAGCTCTAGA
ATGTAGTAATCATTCCAGTACACGTGGTTTTCTAACATTTTGAAGGTGCTAGAAGTAAAG
GGAACCTCTGGGCTTGACTGTTAACATCAGTGCAGCACTAACAATTCTTTCCATACTGAG
ATGTGGGAGAGGGTTTTCTCATCAGCATCTGCAGTTCCTTTTCTGAACTGCCTGTCTTCA
TCTTTGGCTTTGCAGCTTCCTAGACAGCCTGAGTTTTCACTCAGAAACAGCCATTACACA
TCCTGTAATGGCATATTAGGTCATTCTGTCAGTTGCTGCTATTTTCCAGACACCCACAGT
TATGCAGCACAATTTGAGGTGGTGATGTAGTGACTCTGTAAAGTATTGATTCTGCCCTTG
TATTTTCCACATCTGAGCTTACTCTGCGGTAGCTGCTTTATTTCGTCTCAGTCGTTCCTT
CAGTGATAGACACTATTGAGTGTTCATCGTGGGTCTGGCACCTTTCCATTCTTCTGAGAA
AGAATCAAACAGTGTTTAAAACATGGATTTTTAAGAATCATGCATACCTGAGTTCAAGTC
CTGCCTCCTTTACTTACTAACTGCATTTTGGCCAAGTTACTTAGTTTTGCTAAGATTTTC
TCATCTGTAAAATGACAGTGTTAGAAACTGTGTTATAGTGGGTTCGTTGTAGGAGCTTTT
AACAGTTTAGTGATGTAGTATATGCAGTATACTTAG------------------------
------------AAATACTGTTTCAGTGATCACTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTCCTGTCACTGGTGATCATGGTGGCAGAGTCGGTAGCATGGAACATGACCCTGGA
CCCAGTAAAAGAAACCTTTTGGTGCCAGGTTTTTACAAGAGGGGTCTGGATAGCTCTAGA
ATGTAGTAATCATTCCAGTACACGTGGTTTTCTAACATTTTGAAGGTGCTAGAAGTAAAG
GGAACCTCTGGGCTTGACTGTTAACATCAGTGCAGCACTAACAATTCTTTCCATACTGAG
ATGTGGGAGAGGGTTTTCTCATCAGCATCTGCAGTTCCTTTTCTGAACTGCCTGTCTTCA
TCTTTGGCTTTGCAGCTTCCTAGACAGCCTGAGTTTTCACTCAGAAACAGCCATTACACA
TCCTGTAATGGCATATTAGGTCATTCTGTCAGTTGCTGCTATTTTCCAGACACCCACAGT
TATGCAGCACAATTTGAGGTGGTGATGTAGTGACTCTGTAAAGTATTGATTCTGCCCTTG
TATTTTCCACATCTGAGCTTACTCTGCGGTAGCTGCTTTATTTCGTCTCAGTCGTTCCTT
CAGTGATAGACACTATTGAGTGTTCATCGTGGGTCTGGCACCTTTCCATTCTTCTGAGAA
AGAATCAAACAGTGTTTAAAACATGGATTTTTAAGAATCATGCATACCTGAGTTCAAGTC
CTGCCTCCTTTACTTACTAACTGCATTTTGGCCAAGTTACTTAGTTTTGCTAAGATTTTC
TCATCTGTAAAATGACAGTGTTAGAAACTGTGTTATAGTGGGTTCGTTGTAGGAGCTTTT
AACAGTTTAGTGATGTAGTATATGCAGTATACTTAG------------------------
------------AAATACTGTTTCAGTGATCACTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               265-377, - strand, RNAz p=0.911813

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-377, - strand, RNAz p=0.911813

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr4 (48359061-48358239)
               

               
               1-816, gnl|Hg17|chr7 (126600810-126599972)
               

               
               1-816, gnl|Mm7|chr6 (28165860-28165113)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr4 (48359061-48358239)
               

               
               1-816, gnl|Hg17|chr7 (126600810-126599972)
               

               
               1-816, gnl|Mm7|chr6 (28165860-28165113)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-816, gnl\|bosTau2\|chr4 (48359061-48358239)
	1-816, gnl\|Hg17\|chr7 (126600810-126599972)
	1-816, gnl\|Mm7\|chr6 (28165860-28165113)