Non-Coding RNA Search

Ss1.1-LyN3-AR096G07LNEG07S.5

Sequence:


               
               GGAACCCAGGAAGGCTTTGTCTCAAGGAAGGGCTGGTCCGTGGTATTGGCTGCATCTGAA
CCTTCAAGGAAGAGGAGAATTAAACTCTGCTTGTGGATGATCATGGAATTATTATTTTAA
TAAAGACAAACACATGCATGGAAATAAAAGTTCAGATGGTAGGGAGGGGAACCAGATGAA
AATTGATAAGTCCTCTGCTCCCAGTCTCCCCTGACCAGTCTTTTGGTTGGACTCAATGCC
AGAGGTCATTGGAGATTTTCACCAGAACAGTTTCAGTGGGATGGTGAAGATGAGGTATTG
AGGAGTGTGGTGAGGAAGCAGAGATCTTTGAAGACGTCTGCATGCAAAGGGGAGGGGAAA
GGGGGGCACTAGTTAGTGGGGCTGTGGCCCTGGGAATGAGGGGCTTTGTGGTTGTTGTTT
CATGGTTTCAGATGGGAGCATGTTTAAATGCTGGTGGATCTAGTAGAAGGGAGGCGAGGT
TGAGGTACCCGAGAAAGAAAAAGACTAGAAGGTGGGCAGAGCTGGGGTCCTCAGGAGGGG
GCTCTGCAGTTGTAAGTGCAACAGAAGGGTGGCTTATTTGCTGAGGAGTCTGGAGGTTTT
AGTGGCAGAAAGTTGAGGGCCTTCCGGTCTGGCTGCTGCTCAGTTTTTATATCCTGATGG
GCCACCCAGATTCAAAGCCTACCTCACTGAGTGAAGCCCCCACTCCAGGGCAGGCCTGGT
GAAGTTGCCCCCTTGGTGGAAGCAGGGTGCACAAGT------------CGCAGTTTCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACCCAGGAAGGCTTTGTCTCAAGGAAGGGCTGGTCCGTGGTATTGGCTGCATCTGAA
CCTTCAAGGAAGAGGAGAATTAAACTCTGCTTGTGGATGATCATGGAATTATTATTTTAA
TAAAGACAAACACATGCATGGAAATAAAAGTTCAGATGGTAGGGAGGGGAACCAGATGAA
AATTGATAAGTCCTCTGCTCCCAGTCTCCCCTGACCAGTCTTTTGGTTGGACTCAATGCC
AGAGGTCATTGGAGATTTTCACCAGAACAGTTTCAGTGGGATGGTGAAGATGAGGTATTG
AGGAGTGTGGTGAGGAAGCAGAGATCTTTGAAGACGTCTGCATGCAAAGGGGAGGGGAAA
GGGGGGCACTAGTTAGTGGGGCTGTGGCCCTGGGAATGAGGGGCTTTGTGGTTGTTGTTT
CATGGTTTCAGATGGGAGCATGTTTAAATGCTGGTGGATCTAGTAGAAGGGAGGCGAGGT
TGAGGTACCCGAGAAAGAAAAAGACTAGAAGGTGGGCAGAGCTGGGGTCCTCAGGAGGGG
GCTCTGCAGTTGTAAGTGCAACAGAAGGGTGGCTTATTTGCTGAGGAGTCTGGAGGTTTT
AGTGGCAGAAAGTTGAGGGCCTTCCGGTCTGGCTGCTGCTCAGTTTTTATATCCTGATGG
GCCACCCAGATTCAAAGCCTACCTCACTGAGTGAAGCCCCCACTCCAGGGCAGGCCTGGT
GAAGTTGCCCCCTTGGTGGAAGCAGGGTGCACAAGT------------CGCAGTTTCCAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               180-299, + strand, RNAz p=0.614248
               

               
               198-317, - strand, RNAz p=0.626081

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-299, + strand, RNAz p=0.614248
               

               
               198-317, - strand, RNAz p=0.626081

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               2-357, gnl|bosTau2|chr5 (34272229-34272584)
               

               
               2-357, gnl|canFam2|chr10 (4746470-4746837)
               

               
               2-357, gnl|dasNov1|scaffold_41027 (9243-9601)
               

               
               2-357, gnl|hg17|chr12 (56379423-56379817)
               

               
               2-357, gnl|Hg17|chr12 (56379537-56380245)
               

               
               2-357, gnl|panTro1|chr10 (57623386-57623780)
               

               
               2-357, gnl|rheMac2|chr11 (54787206-54787591)
               

               
               2-357, gnl|rn3|chr7 (67087967-67087569)
               


               
               380-726, gnl|bosTau2|chr5 (34272582-34272920)
               

               
               380-726, gnl|Hg17|chr12 (56380218-56380605)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-357, gnl|bosTau2|chr5 (34272229-34272584)
               

               
               2-357, gnl|canFam2|chr10 (4746470-4746837)
               

               
               2-357, gnl|dasNov1|scaffold_41027 (9243-9601)
               

               
               2-357, gnl|hg17|chr12 (56379423-56379817)
               

               
               2-357, gnl|Hg17|chr12 (56379537-56380245)
               

               
               2-357, gnl|panTro1|chr10 (57623386-57623780)
               

               
               2-357, gnl|rheMac2|chr11 (54787206-54787591)
               

               
               2-357, gnl|rn3|chr7 (67087967-67087569)
               


               
               380-726, gnl|bosTau2|chr5 (34272582-34272920)
               

               
               380-726, gnl|Hg17|chr12 (56380218-56380605)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	180-299, + strand, RNAz p=0.614248
	198-317, - strand, RNAz p=0.626081

	2-357, gnl\|bosTau2\|chr5 (34272229-34272584)
	2-357, gnl\|canFam2\|chr10 (4746470-4746837)
	2-357, gnl\|dasNov1\|scaffold_41027 (9243-9601)
	2-357, gnl\|hg17\|chr12 (56379423-56379817)
	2-357, gnl\|Hg17\|chr12 (56379537-56380245)
	2-357, gnl\|panTro1\|chr10 (57623386-57623780)
	2-357, gnl\|rheMac2\|chr11 (54787206-54787591)
	2-357, gnl\|rn3\|chr7 (67087967-67087569)

	380-726, gnl\|bosTau2\|chr5 (34272582-34272920)
	380-726, gnl\|Hg17\|chr12 (56380218-56380605)