Non-Coding RNA Search

Ss1.1-LyN3-AR100F05LNFF05S.5

Sequence:


               
               CACCAGATTCGG------------GCAGCTACGTGCTGAAGGTGGTGGGCGGTGGGCCCA
CCCTGGACACCATCAAGGACTACAGCGAGGAGGATATCTACCGCTTCAACAGCCCCCTGG
ACAAGTAAACCCCGTGGCACCTGGCCCGTAATTCACCTTTCTCCCCTTGGAGGGCCCTCC
CAGCTTCCCAGCCACAGAGCTAACGCAGGCTGCAAGCCCCGCCCACTTTGGACTGGCAGC
CTCATCTGGACCACGAGGAACTCAACGACCACCGAGGACTCGGCCTTCAACATCATGTCC
CACCACAGCTTAGGCATCGAGTGTTGGTGAGCAATAGGTGAGCCAGACAGAGCACATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAGATTCGG------------GCAGCTACGTGCTGAAGGTGGTGGGCGGTGGGCCCA
CCCTGGACACCATCAAGGACTACAGCGAGGAGGATATCTACCGCTTCAACAGCCCCCTGG
ACAAGTAAACCCCGTGGCACCTGGCCCGTAATTCACCTTTCTCCCCTTGGAGGGCCCTCC
CAGCTTCCCAGCCACAGAGCTAACGCAGGCTGCAAGCCCCGCCCACTTTGGACTGGCAGC
CTCATCTGGACCACGAGGAACTCAACGACCACCGAGGACTCGGCCTTCAACATCATGTCC
CACCACAGCTTAGGCATCGAGTGTTGGTGAGCAATAGGTGAGCCAGACAGAGCACATACT

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-214, gnl|bosTau2|chr18 (41132341-41132128)
               

               
               1-214, gnl|canFam2|chr1 (117549749-117549618)
               

               
               1-214, gnl|echTel1|scaffold_264399 (628-752)
               

               
               1-214, gnl|hg17|chr19 (43550197-43550328)
               

               
               1-214, gnl|mm7|chr7 (26124291-26124153)
               

               
               1-214, gnl|monDom2|scaffold_139 (440943-441071)
               

               
               1-214, gnl|panTro1|chr20 (40454814-40454945)
               

               
               1-214, gnl|rheMac2|chr19 (44697886-44698017)
               

               
               1-214, gnl|rn3|chr1 (84403533-84403395)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-214, gnl|bosTau2|chr18 (41132341-41132128)
               

               
               1-214, gnl|canFam2|chr1 (117549749-117549618)
               

               
               1-214, gnl|echTel1|scaffold_264399 (628-752)
               

               
               1-214, gnl|hg17|chr19 (43550197-43550328)
               

               
               1-214, gnl|mm7|chr7 (26124291-26124153)
               

               
               1-214, gnl|monDom2|scaffold_139 (440943-441071)
               

               
               1-214, gnl|panTro1|chr20 (40454814-40454945)
               

               
               1-214, gnl|rheMac2|chr19 (44697886-44698017)
               

               
               1-214, gnl|rn3|chr1 (84403533-84403395)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	1-214, gnl\|bosTau2\|chr18 (41132341-41132128)
	1-214, gnl\|canFam2\|chr1 (117549749-117549618)
	1-214, gnl\|echTel1\|scaffold_264399 (628-752)
	1-214, gnl\|hg17\|chr19 (43550197-43550328)
	1-214, gnl\|mm7\|chr7 (26124291-26124153)
	1-214, gnl\|monDom2\|scaffold_139 (440943-441071)
	1-214, gnl\|panTro1\|chr20 (40454814-40454945)
	1-214, gnl\|rheMac2\|chr19 (44697886-44698017)
	1-214, gnl\|rn3\|chr1 (84403533-84403395)