Non-Coding RNA Search

Ss1.1-Lym1-jns02_A01.f.5

Sequence:


               
               CGGGGCCCGTGGCTGACGGGATAATCCGGGTGCAGCCCAAATCTGAGCTCAAGCCAGGTG
AGCTTAAGCCACTGAGCAAGGAGGATTTGGGGCTGCACGCCTACAGGTGTGAGGACTGCG
GCAAGTGCAAGTGTAAGGAGTGCACCTACCCGAGGCCTCTGCCATCAGACTGGATCTGCG
ACAAGCAGTGCCTTTGCTCAGCCCAGAACGTCATTGACTATGGGACCTGCGTGTGCTGTG
TCAAAGGTCTGTTCTATCACTGTTCTAACGATGACGAGGACAACTGTGCCGACAACCCGT
GTTCTTGCAGCCAGTCTCACTGTTGTACCCGTTGGTCGGCCATGGGTGTCATGTCCCTCT
TTTTGCCTTGCTTATGGTGTTACCTGCCAGCCAAGGGTTGCCTTAAATTGTGCCAGGGGT
GTTATGACCGGGTGAACAGGCCTGGATGCCGCTGTAAAAATTCAAACACAGTTTGCTGCA
GAGTTCCCACTGTCCCACCCAGGAACTTTGAGAAACCGACATAGCATCCTTAATCAGGAA
TATTGCAGTAATAAGGATGGTTCCCTTTTTTTTTTGTTTTTGTTTTTTAACACACACATA
TGCAACCAGCTCAACAGTTATAATCTTGGCACTGTTCATAGAGGGTTGGAATATCCTTTG
CTGTTTGCAGTGAAATGCTTTTTGTCCGTGTGCCATTTTAACTGATATGCTTGTTAGAAC
TCAGCTAATGGAGCTCCGAGTGGGGGATACAGATCTTGGCGACCTACATGTTGCATAAGC
TAAAGCAACAGACACTCCTAGGCAAAGTTTTTGTTTGTGAATAGTACTTGCAAAATTTGT
AAATTAGCAAATGACTTTTTTTTTCCATTGTTTTCTCCAGAGATAATGTGCTATATTTTT
GTATATACAATAATATTTGCAACTGTGAAAAACAAGTTGTGCCATGCTATATGGCACAGT
CACAAAATATTATACTAATATGTTGTACATTCGGAAGAATGTGAATCAATCAGTATGTTT
TTAGATTGTATTTTGCCTTACAGAAAGCCTTTATTGTAAGACTCTGATTTCCCTTTGGAC
TTCATGTATATTGTACAGTTACAGTAAAATCCAACCTTTATTTTCTAATTTTTTCAACAT
ATTGTTTAGTGTAAAGAATATTTATTTGAAGTTTTATTATTTTATAAAAAAGAATATTTA
TTTTAAGAGGCATCTTACAGATTTTGCCCCTTTTATGAGGATGTGATAGTTGCTGCAAAT
GAGGGGTTACAGATGCATATGTTCAATATAAAATAGAAAATATATTAACGTTTGAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGCCCGTGGCTGACGGGATAATCCGGGTGCAGCCCAAATCTGAGCTCAAGCCAGGTG
AGCTTAAGCCACTGAGCAAGGAGGATTTGGGGCTGCACGCCTACAGGTGTGAGGACTGCG
GCAAGTGCAAGTGTAAGGAGTGCACCTACCCGAGGCCTCTGCCATCAGACTGGATCTGCG
ACAAGCAGTGCCTTTGCTCAGCCCAGAACGTCATTGACTATGGGACCTGCGTGTGCTGTG
TCAAAGGTCTGTTCTATCACTGTTCTAACGATGACGAGGACAACTGTGCCGACAACCCGT
GTTCTTGCAGCCAGTCTCACTGTTGTACCCGTTGGTCGGCCATGGGTGTCATGTCCCTCT
TTTTGCCTTGCTTATGGTGTTACCTGCCAGCCAAGGGTTGCCTTAAATTGTGCCAGGGGT
GTTATGACCGGGTGAACAGGCCTGGATGCCGCTGTAAAAATTCAAACACAGTTTGCTGCA
GAGTTCCCACTGTCCCACCCAGGAACTTTGAGAAACCGACATAGCATCCTTAATCAGGAA
TATTGCAGTAATAAGGATGGTTCCCTTTTTTTTTTGTTTTTGTTTTTTAACACACACATA
TGCAACCAGCTCAACAGTTATAATCTTGGCACTGTTCATAGAGGGTTGGAATATCCTTTG
CTGTTTGCAGTGAAATGCTTTTTGTCCGTGTGCCATTTTAACTGATATGCTTGTTAGAAC
TCAGCTAATGGAGCTCCGAGTGGGGGATACAGATCTTGGCGACCTACATGTTGCATAAGC
TAAAGCAACAGACACTCCTAGGCAAAGTTTTTGTTTGTGAATAGTACTTGCAAAATTTGT
AAATTAGCAAATGACTTTTTTTTTCCATTGTTTTCTCCAGAGATAATGTGCTATATTTTT
GTATATACAATAATATTTGCAACTGTGAAAAACAAGTTGTGCCATGCTATATGGCACAGT
CACAAAATATTATACTAATATGTTGTACATTCGGAAGAATGTGAATCAATCAGTATGTTT
TTAGATTGTATTTTGCCTTACAGAAAGCCTTTATTGTAAGACTCTGATTTCCCTTTGGAC
TTCATGTATATTGTACAGTTACAGTAAAATCCAACCTTTATTTTCTAATTTTTTCAACAT
ATTGTTTAGTGTAAAGAATATTTATTTGAAGTTTTATTATTTTATAAAAAAGAATATTTA
TTTTAAGAGGCATCTTACAGATTTTGCCCCTTTTATGAGGATGTGATAGTTGCTGCAAAT
GAGGGGTTACAGATGCATATGTTCAATATAAAATAGAAAATATATTAACGTTTGAAATTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|31416851|gb|AAH04205.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31416851|gb|AAH04205.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-197, - strand, RNAz p=0.953697
               

               
               880-1075, + strand, RNAz p=0.995831

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-197, - strand, RNAz p=0.953697
               

               
               880-1075, + strand, RNAz p=0.995831

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1320, gnl|bosTau2|chr12 (31575035-31576375)
               

               
               1-1320, gnl|Hg17|chr13 (79809417-79808114)
               

               
               1-1320, gnl|Mm7|chr14 (100323015-100321634)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1320, gnl|bosTau2|chr12 (31575035-31576375)
               

               
               1-1320, gnl|Hg17|chr13 (79809417-79808114)
               

               
               1-1320, gnl|Mm7|chr14 (100323015-100321634)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               lin (0.873617)
               

               
               fco (0.471624)
               

               
               fat (0.294855)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               ldo (0.194005)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.873617)
               

               
               fco (0.471624)
               

               
               fat (0.294855)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               ldo (0.194005)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-197, - strand, RNAz p=0.953697
	880-1075, + strand, RNAz p=0.995831

	1-1320, gnl\|bosTau2\|chr12 (31575035-31576375)
	1-1320, gnl\|Hg17\|chr13 (79809417-79808114)
	1-1320, gnl\|Mm7\|chr14 (100323015-100321634)

	lin (0.873617)
	fco (0.471624)
	fat (0.294855)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	mas (0.210305)
	ldo (0.194005)
	sto (0.179824)
	cut (0.169924)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)