Non-Coding RNA Search

Ss1.1-Lym1-jns02_H11.r.3

Sequence:


               
               AGGAGGGCTTGTTTTCTGGGCGCTCTCAGGAAGGGCCCGAGAAAGGCACACCTGCTCCTG
TGTGGTGCCATTTTGCTTCTATCAGACAGCAGGGAGGAGAAGGCAGGGAGCCAGAAAAAG
GAGCAGCGAGGGCACACGTCCTGGGACTGGGGACTGGGGACCGAAGTGAGAGCAACCACC
TAGTTAGGGAGCCGAGGATCAGCCAGGCTGCGTGATGGGGCTGGCAGGCGCCGGGGCGTT
TCGGTCAGGTGAGCCCCTCCCTTCCCGATCCTCCTACTGCTCAGCCCATCCTACAGGTGT
CCTGCCCCCCTTCCCACCCAGCCCACCCATTTGAAGTCTCCTTCGGCCACCGAAGGTGGT
TATGGTACTGGAGACTTGGGAGAGTGAGAGACCCTGGGGACAGGGGTGGGGGGGGCAGCG
AAGGGAGAGGGATGTCAGGGGTCGGGGGCAGGGGGGTGGGAGGAATGAGGTGAACGGTGT
TGGCAATTCGGCTAAATTGTCTGGTTGGGGTTTTTTGTTTTGTTTAAGGTATATTTTTAT
TATAATTATTATATATGAATTCCCTTCAAATCGTTCCTTTTTGTTAACAAGGGGGATAGG
GAGGGGTGGGGGTGGGGGGCCAAAGGCATCCGACCCCAGGAACCTGCAGGGCGGGGCTGG
GTCAGTGCCCTCTAAGGACATTTTTGACCTTGTTCATCCTTTCCACGAAGAATAAACAGT
GTTTCACATTCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGGCTTGTTTTCTGGGCGCTCTCAGGAAGGGCCCGAGAAAGGCACACCTGCTCCTG
TGTGGTGCCATTTTGCTTCTATCAGACAGCAGGGAGGAGAAGGCAGGGAGCCAGAAAAAG
GAGCAGCGAGGGCACACGTCCTGGGACTGGGGACTGGGGACCGAAGTGAGAGCAACCACC
TAGTTAGGGAGCCGAGGATCAGCCAGGCTGCGTGATGGGGCTGGCAGGCGCCGGGGCGTT
TCGGTCAGGTGAGCCCCTCCCTTCCCGATCCTCCTACTGCTCAGCCCATCCTACAGGTGT
CCTGCCCCCCTTCCCACCCAGCCCACCCATTTGAAGTCTCCTTCGGCCACCGAAGGTGGT
TATGGTACTGGAGACTTGGGAGAGTGAGAGACCCTGGGGACAGGGGTGGGGGGGGCAGCG
AAGGGAGAGGGATGTCAGGGGTCGGGGGCAGGGGGGTGGGAGGAATGAGGTGAACGGTGT
TGGCAATTCGGCTAAATTGTCTGGTTGGGGTTTTTTGTTTTGTTTAAGGTATATTTTTAT
TATAATTATTATATATGAATTCCCTTCAAATCGTTCCTTTTTGTTAACAAGGGGGATAGG
GAGGGGTGGGGGTGGGGGGCCAAAGGCATCCGACCCCAGGAACCTGCAGGGCGGGGCTGG
GTCAGTGCCCTCTAAGGACATTTTTGACCTTGTTCATCCTTTCCACGAAGAATAAACAGT
GTTTCACATTCAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               268-418, - strand, RNAz p=0.999537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-418, - strand, RNAz p=0.999537

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-571, gnl|bosTau2|chr10 (14159357-14158796)
               

               
               3-571, gnl|Hg17|chr14 (22386107-22386650)
               

               
               3-571, gnl|Mm7|chr14 (49308812-49309344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-571, gnl|bosTau2|chr10 (14159357-14158796)
               

               
               3-571, gnl|Hg17|chr14 (22386107-22386650)
               

               
               3-571, gnl|Mm7|chr14 (49308812-49309344)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nca (0.273748)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               cag (0.151194)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               cag (0.151194)

	3-571, gnl\|bosTau2\|chr10 (14159357-14158796)
	3-571, gnl\|Hg17\|chr14 (22386107-22386650)
	3-571, gnl\|Mm7\|chr14 (49308812-49309344)