Ss1.1-Lym1-jns04_B08.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCATTAACCCATAACAATTTTAATGCTACACAAACCTATGTGAAGACAAGACTGGTGT GGACTCCTTTTTTCCTGGGTCTAAATTAAAATAATCACTAGATTTATGTGAACGTGAAGC CAGCACGCCAGGCCCAGTTAATGCTAGTCTTTCATGTGAAATGTGAAGCTGCCACGTTGC CTCTTTCTGTTCGTGTGATACCTGGGAGCTGGTACATAATCACTAAGGAGCTATTTGCTA ACATGCTTTGATAGACCACATTGATGCTAGACCACTATCTAAGGGCTAATCTCCCCCCTC CTTAGCCATAAGAGTCTGGCCTAGGACAGACCTCTCTGTGCAATAACATGTGGCCACTGG AAATCCCTGGCCTGCATTTGTATGGGGGCAGCAGTGACTCCCGAGGGCCAAAAGAGTTAA AGGCACAACTGGGATTTCTTCTGAGACTGTGGTGAGACTCCTTCCAAGGCTGGGGGGTCA CGAGGTGCTCTGCTGGAACTCAGCACCAGTTGATAGTCAACAGCCACTTGAGCCAAATAG AAAATGGTATGACCGCTGATGGACTCCATTTGAGCCTTCAAATTTGTGGTTATCCTATTA TATTGTAAATGAATACATTGTTTGTCTAGCATTGATTAGGTTCCTGTGCATATGTATTTT CACCACATGCTCCCCTTCCCCTTCCCAGATACAAATTAAACCTGATTTTGCAAACAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCATTAACCCATAACAATTTTAATGCTACACAAACCTATGTGAAGACAAGACTGGTGT GGACTCCTTTTTTCCTGGGTCTAAATTAAAATAATCACTAGATTTATGTGAACGTGAAGC CAGCACGCCAGGCCCAGTTAATGCTAGTCTTTCATGTGAAATGTGAAGCTGCCACGTTGC CTCTTTCTGTTCGTGTGATACCTGGGAGCTGGTACATAATCACTAAGGAGCTATTTGCTA ACATGCTTTGATAGACCACATTGATGCTAGACCACTATCTAAGGGCTAATCTCCCCCCTC CTTAGCCATAAGAGTCTGGCCTAGGACAGACCTCTCTGTGCAATAACATGTGGCCACTGG AAATCCCTGGCCTGCATTTGTATGGGGGCAGCAGTGACTCCCGAGGGCCAAAAGAGTTAA AGGCACAACTGGGATTTCTTCTGAGACTGTGGTGAGACTCCTTCCAAGGCTGGGGGGTCA CGAGGTGCTCTGCTGGAACTCAGCACCAGTTGATAGTCAACAGCCACTTGAGCCAAATAG AAAATGGTATGACCGCTGATGGACTCCATTTGAGCCTTCAAATTTGTGGTTATCCTATTA TATTGTAAATGAATACATTGTTTGTCTAGCATTGATTAGGTTCCTGTGCATATGTATTTT CACCACATGCTCCCCTTCCCCTTCCCAGATACAAATTAAACCTGATTTTGCAAACAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 39-157, + strand, RNAz p=0.614438 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-157, + strand, RNAz p=0.614438 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_005779, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-393, gnl|bosTau2|chr10 (3565667-3565281) | |
| 1-393, gnl|Hg17|chr5 (77817510-77817125) | |
| 1-393, gnl|Mm7|chr13 (91257715-91258088) | |
| 419-715, gnl|bosTau2|chr10 (3565276-3564985) | |
| 419-715, gnl|canFam2|chr3 (31167028-31166634) | |
| 419-715, gnl|canFam2|chr3 (31167190-31166634) | |
| 419-715, gnl|echTel1|scaffold_313447 (39542-39167) | |
| 419-715, gnl|echTel1|scaffold_313447 (39693-39167) | |
| 419-715, gnl|hg17|chr11 (86903370-86903763) | |
| 419-715, gnl|hg17|chr5 (77816637-77817200) | |
| 419-715, gnl|Hg17|chr5 (77817099-77816812) | |
| 419-715, gnl|loxAfr1|scaffold_7232 (59138-58751) | |
| 419-715, gnl|loxAfr1|scaffold_7232 (59311-58751) | |
| 419-715, gnl|mm7|chr13 (91258401-91258032) | |
| 419-715, gnl|mm7|chr13 (91258512-91258032) | |
| 419-715, gnl|Mm7|chr13 (91258098-91258396) | |
| 419-715, gnl|monDom2|scaffold_27 (37817989-37817594) | |
| 419-715, gnl|monDom2|scaffold_27 (37818137-37817594) | |
| 419-715, gnl|panTro1|chr4 (37399652-37399084) | |
| 419-715, gnl|panTro1|chr9 (88728129-88728522) | |
| 419-715, gnl|rheMac2|chr14 (85796085-85796477) | |
| 419-715, gnl|rheMac2|chr6 (74739527-74740091) | |
| 419-715, gnl|rn3|chr2 (24409778-24409390) | |
| 419-715, gnl|rn3|chr2 (24409862-24409390) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-393, gnl|bosTau2|chr10 (3565667-3565281) | |
| 1-393, gnl|Hg17|chr5 (77817510-77817125) | |
| 1-393, gnl|Mm7|chr13 (91257715-91258088) | |
| 419-715, gnl|bosTau2|chr10 (3565276-3564985) | |
| 419-715, gnl|canFam2|chr3 (31167028-31166634) | |
| 419-715, gnl|canFam2|chr3 (31167190-31166634) | |
| 419-715, gnl|echTel1|scaffold_313447 (39542-39167) | |
| 419-715, gnl|echTel1|scaffold_313447 (39693-39167) | |
| 419-715, gnl|hg17|chr11 (86903370-86903763) | |
| 419-715, gnl|hg17|chr5 (77816637-77817200) | |
| 419-715, gnl|Hg17|chr5 (77817099-77816812) | |
| 419-715, gnl|loxAfr1|scaffold_7232 (59138-58751) | |
| 419-715, gnl|loxAfr1|scaffold_7232 (59311-58751) | |
| 419-715, gnl|mm7|chr13 (91258401-91258032) | |
| 419-715, gnl|mm7|chr13 (91258512-91258032) | |
| 419-715, gnl|Mm7|chr13 (91258098-91258396) | |
| 419-715, gnl|monDom2|scaffold_27 (37817989-37817594) | |
| 419-715, gnl|monDom2|scaffold_27 (37818137-37817594) | |
| 419-715, gnl|panTro1|chr4 (37399652-37399084) | |
| 419-715, gnl|panTro1|chr9 (88728129-88728522) | |
| 419-715, gnl|rheMac2|chr14 (85796085-85796477) | |
| 419-715, gnl|rheMac2|chr6 (74739527-74740091) | |
| 419-715, gnl|rn3|chr2 (24409778-24409390) | |
| 419-715, gnl|rn3|chr2 (24409862-24409390) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| pla (0.267344) | |
| nco (0.161734) | |
| cag (0.151194) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ese (0.126502) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nco (0.161734) | |
| cag (0.151194) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ese (0.126502) | |
| jej (0.0989218) | |
| eje (0.0988338) |