Non-Coding RNA Search

Ss1.1-Lym1-jns06_F01.f.5

Sequence:


               
               AAGAGCGAGAAGCTGAGCTTGGAGCCAAAGCCAAGGAATTCACCAATGTTTATATCAAAA
ACTTTGGAGAAGAGGTGGATGATGAGAATCTGAAAGAGCTCTTCAGCCAGTTTGGTAAGA
CCTTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGA
GTTACGAAAAACACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCA
GTGGGAAGGTCATTTTTGTCGGCCGTGCACAGAAGAAAGTGGAACGGCAGGCTGAGTTAA
AGCGGAAATTTGAACAGCTGAAACAGGAGAGAATTAGTCGCTATCAGGGGGTGAATCTCT
ACATTAAGAACTTGGATGACACCATTGATGATGAGAAGTTAAGGAAAGAGTTTTCTCCTT
TTGGATCAATCACCAGTGCTAAGGTGTTCCCACAGCTGTGCAGAACTTAGCGCCTCGTGC
TGCTGTTGCTACCGCTGCTCCTCGGGCTGTTGCACCTTACAAATACGCGTCCAGTGTCCG
CAGCCCTCACCCTGCCATCCAGCCTCTGCAGGCACCCCAGCCTGCAGTCCATGTGCAGGG
GCAGGAGCCACTGACCGCATCCATGCTGGCCGCAGCACCCCCCCAGGAACAGAAGCAGAT
GCTGGGTGAACGTTTGTTCCCACTCATCCAGACCATGCACTCAAACCTGGCTGGGAAGAT
TACGGGGATGCTGCTGGAGATTGACAACTCAGAGCTGCTGCACATGCTGGAGTCCCCCGA
GTCTCTCCGCTCCAAGGTGGATGAAGCTGTAGCGGTCCTACAGGCTCATCATGCCAAGAA
AGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAGACAAGGACAAACCG
ATTCAAAAGCCAAATAAACCCTCATGGAGTTCAGCTCAAGGTTTGAAGACTTCTTAGCTT
GTCCTATGGACCTCAGTACCAAGAACCACAAATTGCAAATTTAATAGGTCATTTTGTATC
AAAAGGTCAATTATGAAGCACCTAGAACTTTTCAATTAAAAGACTATATTCTCTGGGTTC
TGGTATGGCCCAGACAGTGTTAACTTTTTTTTTCTATTGTGGGTTTTGGTCTTTTCTCCC
CCAAATTGGTTTTATTTGATGTACCCAAGTCTTAAGTTTAATAAAGAAAAAAAATCTCCA
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGCGAGAAGCTGAGCTTGGAGCCAAAGCCAAGGAATTCACCAATGTTTATATCAAAA
ACTTTGGAGAAGAGGTGGATGATGAGAATCTGAAAGAGCTCTTCAGCCAGTTTGGTAAGA
CCTTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGA
GTTACGAAAAACACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCA
GTGGGAAGGTCATTTTTGTCGGCCGTGCACAGAAGAAAGTGGAACGGCAGGCTGAGTTAA
AGCGGAAATTTGAACAGCTGAAACAGGAGAGAATTAGTCGCTATCAGGGGGTGAATCTCT
ACATTAAGAACTTGGATGACACCATTGATGATGAGAAGTTAAGGAAAGAGTTTTCTCCTT
TTGGATCAATCACCAGTGCTAAGGTGTTCCCACAGCTGTGCAGAACTTAGCGCCTCGTGC
TGCTGTTGCTACCGCTGCTCCTCGGGCTGTTGCACCTTACAAATACGCGTCCAGTGTCCG
CAGCCCTCACCCTGCCATCCAGCCTCTGCAGGCACCCCAGCCTGCAGTCCATGTGCAGGG
GCAGGAGCCACTGACCGCATCCATGCTGGCCGCAGCACCCCCCCAGGAACAGAAGCAGAT
GCTGGGTGAACGTTTGTTCCCACTCATCCAGACCATGCACTCAAACCTGGCTGGGAAGAT
TACGGGGATGCTGCTGGAGATTGACAACTCAGAGCTGCTGCACATGCTGGAGTCCCCCGA
GTCTCTCCGCTCCAAGGTGGATGAAGCTGTAGCGGTCCTACAGGCTCATCATGCCAAGAA
AGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAGACAAGGACAAACCG
ATTCAAAAGCCAAATAAACCCTCATGGAGTTCAGCTCAAGGTTTGAAGACTTCTTAGCTT
GTCCTATGGACCTCAGTACCAAGAACCACAAATTGCAAATTTAATAGGTCATTTTGTATC
AAAAGGTCAATTATGAAGCACCTAGAACTTTTCAATTAAAAGACTATATTCTCTGGGTTC
TGGTATGGCCCAGACAGTGTTAACTTTTTTTTTCTATTGTGGGTTTTGGTCTTTTCTCCC
CCAAATTGGTTTTATTTGATGTACCCAAGTCTTAAGTTTAATAAAGAAAAAAAATCTCCA
TAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               618-720, - strand, RNAz p=0.959996
               

               
               1037-1145, + strand, RNAz p=0.558159

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               618-720, - strand, RNAz p=0.959996
               

               
               1037-1145, + strand, RNAz p=0.558159

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               478-855, gnl|bosTau2|chr14 (50128202-50128585)
               

               
               478-855, gnl|Hg17|chr8 (101788166-101785739)
               

               
               478-855, gnl|Mm7|chr17 (24453215-24453587)
               


               
               878-1212, gnl|bosTau2|chr12 (31266352-31266683)
               

               
               878-1212, gnl|Hg17|chr15 (92378405-92378743)
               

               
               878-1212, gnl|Mm7|chr14 (84626879-84626549)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               478-855, gnl|bosTau2|chr14 (50128202-50128585)
               

               
               478-855, gnl|Hg17|chr8 (101788166-101785739)
               

               
               478-855, gnl|Mm7|chr17 (24453215-24453587)
               


               
               878-1212, gnl|bosTau2|chr12 (31266352-31266683)
               

               
               878-1212, gnl|Hg17|chr15 (92378405-92378743)
               

               
               878-1212, gnl|Mm7|chr14 (84626879-84626549)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               cbr (0.511902)
               

               
               ece (0.45861)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               nbm (0.297974)
               

               
               fat (0.294855)
               

               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.511902)
               

               
               ece (0.45861)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               nbm (0.297974)
               

               
               fat (0.294855)
               

               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	618-720, - strand, RNAz p=0.959996
	1037-1145, + strand, RNAz p=0.558159

	478-855, gnl\|bosTau2\|chr14 (50128202-50128585)
	478-855, gnl\|Hg17\|chr8 (101788166-101785739)
	478-855, gnl\|Mm7\|chr17 (24453215-24453587)

	878-1212, gnl\|bosTau2\|chr12 (31266352-31266683)
	878-1212, gnl\|Hg17\|chr15 (92378405-92378743)
	878-1212, gnl\|Mm7\|chr14 (84626879-84626549)

	cbr (0.511902)
	ece (0.45861)
	csp (0.322373)
	sme (0.305437)
	nbm (0.297974)
	fat (0.294855)
	clu (0.239292)
	pan (0.23596)
	mas (0.210305)
	eje (0.197668)
	sag (0.182715)
	gul (0.177588)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	cje (0.165235)
	eli (0.151814)
	isp (0.150376)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	ste (0.135208)
	sug (0.127291)
	ese (0.126502)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)